YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|107104587
Organism:	Pseudomonas aeruginosa PACS2
Length:	259 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|107104587.

Description	E-value	Query Range	Subject Range
gi\|49082910 - gi\|49082910\|gb\|AAT50855.1\| PA5485 [synthetic construct]	3.0E-73	[1..259]	[1..259]
gi\|94417198, gi\|... - gi\|94417198\|ref\|ZP_01297017.1\| hypothetical protein PaerP_01000994 [Pseudomonas aeruginosa PA7], gi\|...	1.0E-72	[1..259]	[1..259]
tr\|Q88AP8\|Q88AP8... - N-acetylmuramoyl-L-alanine amidase, family 2 OS=Pseudomonas syringae pv. tomato (strain DC3000) GN=P... gi\|28850804, gi\|... - gi\|28867569\|ref\|NP_790188.1\| N-acetylmuramoyl-L-alanine amidase [Pseudomonas syringae pv. tomato str...	4.0E-70	[2..256]	[1..255]
gi\|66043535, gi\|... - gi\|66043535\|ref\|YP_233376.1\| N-acetylmuramoyl-L-alanine amidase [Pseudomonas syringae pv. syringae B...	6.0E-70	[1..256]	[24..279]
gi\|71554603, gi\|... - gi\|71734050\|ref\|YP_272559.1\| N-acetylmuramoyl-L-alanine amidase [Pseudomonas syringae pv. phaseolico...	2.0E-69	[2..256]	[1..255]
gi\|24981477, gi\|... - gi\|26986875\|ref\|NP_742300.1\| N-acetylmuramoyl-L-alanine amidase family protein [Pseudomonas putida K...	9.0E-68	[3..256]	[6..258]
gi\|82715560, gi\|... - gi\|82737396\|ref\|ZP_00900246.1\| N-acetylmuramoyl-L-alanine amidase, family 2 [Pseudomonas putida F1],... tr\|E4RAR9\|E4RAR9... - AmiD OS=Pseudomonas putida (strain BIRD-1) GN=amiD PE=4 SV=1	1.0E-67	[3..256]	[6..258]
gi\|70733600, gi\|... - gi\|70733600\|ref\|YP_257240.1\| N-acetylmuramoyl-L-alanine amidase [Pseudomonas fluorescens Pf-5], gi\|6...	4.0E-65	[16..256]	[15..255]
gi\|48733063, gi\|... - gi\|77456277\|ref\|YP_345782.1\| AmpD [Pseudomonas fluorescens Pf0-1], gi\|77380280\|gb\|ABA71793.1\| putati...	6.0E-65	[16..256]	[15..255]
gi\|154707367, gi... - gi\|94491397\|ref\|ZP_01298610.1\| hypothetical protein CburD_01001527 [Coxiella burnetii Dugway 7E9-12]... gi\|161830043, gi... - gi\|95926973\|ref\|ZP_01309741.1\| hypothetical protein CburR_01001200 [Coxiella burnetii RSA 331], gi\|1... gi\|29540989, gi\|... - gi\|29653726\|ref\|NP_819418.1\| anhydro-N-acetylmuramyl-tripeptide amidase [Coxiella burnetii RSA 493],...	8.0E-65	[20..256]	[2..243]

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Predicted Domain #1

Region A:
Residues: [1-259]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRSFVLLAFT LSLLAGCSSG PRLNTDYTSA NQDSRVQFIV LHYTSTDLPH SLGILTHGGV  60
   61 SAHYLIGDDE PATVYRLVDE NRRAWHAGVS EWQGRTWLNA TSIGIEIVNQ GYRDTPQGRV 120
  121 WYPFSEAQIQ ALIPLLKDIA KRHGITPDRI IGHSDIAPGR KVDPGPLFPW KRLADAGLVP 180
  181 WPKPGELARR LAELNGQLPD VRWFQQQLAR HGYLVPQTGE LEKDTRDVIG AFQMKYRPAR 240
  241 FDGEPDLETA ALLLAVPTS

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	57.045757
Match:	2bgxA
Description:	No description for 2bgxA was found.

Predicted functions:

Term	Confidence	Notes
N-acetylmuramoyl-L-alanine amidase activity	5.29207604418857	bayes_pls_golite062009
peptidoglycan binding	5.10635543502728	bayes_pls_golite062009
hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds, in linear amides	3.20235326428146	bayes_pls_golite062009
N-acetyl-anhydromuramoyl-L-alanine amidase activity	1.8723848738588	bayes_pls_golite062009
pattern binding	1.3169647365105	bayes_pls_golite062009
hydrolase activity	1.08510134637257	bayes_pls_golite062009
catalytic activity	0.628556091191359	bayes_pls_golite062009
receptor activity	0.165305685738616	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: