YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|107101416
Organism:	Pseudomonas aeruginosa PACS2
Length:	92 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|107101416.

Description	E-value	Query Range	Subject Range
PQQD_RAHAQ - Coenzyme PQQ synthesis protein D OS=Rahnella aquatilis GN=pqqD PE=3 SV=2	139.0	[0..1]	[92..1]
PQQD_PSEA7 - Coenzyme PQQ synthesis protein D OS=Pseudomonas aeruginosa (strain PA7) GN=pqqD PE=3 SV=1	138.0	[0..1]	[92..1]
gi\|194551410, gi... - gi\|84327661\|ref\|ZP_00975678.1\| hypothetical protein Paer2_01001096 [Pseudomonas aeruginosa 2192], gi...	137.0	[0..1]	[92..1]
gi\|67088389, gi\|... - gi\|67154256\|ref\|ZP_00416001.1\| Coenzyme PQQ synthesis D [Azotobacter vinelandii AvOP], gi\|67088389\|g... gi\|67154256 - gi\|67154256\|ref\|ZP_00416001.1\| Coenzyme PQQ synthesis D [Azotobacter vinelandii AvOP]	133.0	[0..1]	[91..3]
PQQD_PSEU2 - Coenzyme PQQ synthesis protein D OS=Pseudomonas syringae pv. syringae (strain B728a) GN=pqqD PE=3 SV...	130.0	[0..6]	[91..8]
gi\|59891640 - gi\|59891640\|gb\|AAX10037.1\| pyrroloquinoline quinone biosynthesis protein D [Pseudomonas fluorescens]	130.0	[0..5]	[91..4]
gi\|95108660 - gi\|95108660\|emb\|CAK13354.1\| coenzyme PQQ synthesis protein D (Coenzyme PQQ synthesis protein II) [Ps... PQQD_PSEE4 - Coenzyme PQQ synthesis protein D OS=Pseudomonas entomophila (strain L48) GN=pqqD PE=3 SV=1	129.0	[0..5]	[91..4]
gi\|82738185, gi\|... - gi\|82738185\|ref\|ZP_00901023.1\| coenzyme PQQ synthesis protein D [Pseudomonas putida F1], gi\|82714792...	129.0	[0..5]	[91..11]
PQQD_PSESM - Coenzyme PQQ synthesis protein D OS=Pseudomonas syringae pv. tomato GN=pqqD PE=3 SV=1 PQQD_PSESM - Coenzyme PQQ synthesis protein D OS=Pseudomonas syringae pv. tomato (strain DC3000) GN=pqqD PE=3 SV=...	128.0	[0..6]	[91..12]
PQQD_PSEPF - Coenzyme PQQ synthesis protein D OS=Pseudomonas fluorescens (strain Pf0-1) GN=pqqD PE=3 SV=1	127.0	[0..5]	[91..4]

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Predicted Domain #1

Region A:
Residues: [1-92]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSLPSLDSVP MLRRGFRFQF EPAQDCHVLL YPEGMVKLND SAGEILKLVD GRRDVAAIVA  60
   61 ALRERFPEVP GIDEDILAFL EVAHAQFWIE LQ

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	52.958607
Match:	PF05402.3
Description:	No description for PF05402.3 was found.

Shown below is our most confident prediction for this domain.
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Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits