YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|107100519
Organism:	Pseudomonas aeruginosa PACS2
Length:	373 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|107100519.

Description	E-value	Query Range	Subject Range
gi\|151110 - gi\|151110\|gb\|AAA88430.1\| leucine-, isoleucine-, and valine-binding protein [Pseudomonas aeruginosa]	2.0E-83	[1..373]	[1..373]
gi\|53727484, gi\|... - gi\|53727484\|ref\|ZP_00138660.2\| COG0683: ABC-type branched-chain amino acid transport systems, peripl...	4.0E-83	[1..373]	[1..373]
gi\|63257779, gi\|... - gi\|66047072\|ref\|YP_236913.1\| extracellular ligand-binding receptor [Pseudomonas syringae pv. syringa...	2.0E-81	[1..370]	[1..370]
gi\|71734131, gi\|... - gi\|71734131\|ref\|YP_273673.1\| high-affinity branched-chain amino acid ABC transporter, periplasmic am...	2.0E-80	[1..370]	[24..393]
gi\|83644114, gi\|... - gi\|83644114\|ref\|YP_432549.1\| ABC-type branched-chain amino acid transport system, periplasmic compon...	6.0E-80	[1..373]	[1..373]
gi\|94415932 - gi\|94415932\|ref\|ZP_01295764.1\| hypothetical protein PaerP_01002261 [Pseudomonas aeruginosa PA7]	7.0E-80	[15..373]	[1..359]
gi\|77381478, gi\|... - gi\|77457475\|ref\|YP_346980.1\| extracellular ligand-binding receptor [Pseudomonas fluorescens Pf0-1], ...	2.0E-79	[1..370]	[1..370]
gi\|146297472, gi... - gi\|82499532\|ref\|ZP_00884975.1\| ABC transporter (substrate-binding protein) [Caldicellulosiruptor sac...	2.0E-79	[2..368]	[10..386]
gi\|213971399, gi... - gi\|213971399\|ref\|ZP_03399513.1\| high-affinity branched-chain amino acid ABC transporter, periplasmic... tr\|Q87XR8\|Q87XR8... - High-affinity branched-chain amino acid ABC transporter, periplasmic amino acid-binding protein OS=P... gi\|28871250, gi\|... - gi\|28871250\|ref\|NP_793869.1\| high-affinity branched-chain amino acid ABC transporter, periplasmic am...	3.0E-79	[1..370]	[1..370]
tr\|I7C7N1\|I7C7N1... - Extracellular ligand-binding receptor OS=Pseudomonas putida (strain DOT-T1E) GN=braC PE=4 SV=1 gi\|82737502, gi\|... - gi\|82737502\|ref\|ZP_00900351.1\| branched-chain amino acid ABC transporter, periplasmic amino acid-bin...	6.0E-79	[7..372]	[3..368]

Back

Predicted Domain #1

Region A:
Residues: [1-373]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKKGTQRLSR LFAAMAIAGF ASYSMAADTI KIALAGPVTG PVAQYGDMQR AGALMAIEQI  60
   61 NKAGGVNGAQ LEGVIYDDAC DPKQAVAVAN KVVNDGVKFV VGHVCSSSTQ PATDIYEDEG 120
  121 VLMITPSATA PEITSRGYKL IFRTIGLDNM QGPVAGKFIA ERYKDKTIAV LHDKQQYGEG 180
  181 IATEVKKTVE DAGIKVAVFE GLNAGDKDFN ALISKLKKAG VQFVYFGGYH PEMGLLLRQA 240
  241 KQAGLDARFM GPEGVGNSEI TAIAGDASEG MLATLPRAFE QDPKNKALID AFKAKNQDPS 300
  301 GIFVLPAYSA VTVIAKGIEK AGEADPEKVA EALRANTFET PTGNLGFDEK GDLKNFDFTV 360
  361 YEWHKDATRT EVK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	71.30103
Match:	1usgA
Description:	L-leucine-binding protein, apo form
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits