YRC Public Data Repository - Protein Structure Prediction

Protein:	NSG1_MOUSE
Organism:	Mus musculus
Length:	185 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for NSG1_MOUSE.

Description	E-value	Query Range	Subject Range
NSG1_CHICK - Neuron-specific protein family member 1 OS=Gallus gallus GN=NSG1 PE=2 SV=1	352.0	[0..1]	[185..1]
NSG1_RAT - Neuron-specific protein family member 1 OS=Rattus norvegicus GN=Nsg1 PE=2 SV=2	350.0	[0..1]	[185..1]
gi\|115304776, gi... - gi\|118151022\|ref\|NP_001071425.1\| neuron specific gene family member 1 [Bos taurus], gi\|115304776\|gb\|...	349.0	[0..1]	[185..1]
gi\|22476915 - gi\|22476915\|gb\|AAM97344.1\|AF531172_1 carboxyterminally EE-tagged neuron-enriched endosomal 21 kDa pr...	347.0	[0..1]	[185..1]
gi\|26346923 - gi\|26346923\|dbj\|BAC37110.1\| unnamed protein product [Mus musculus]	347.0	[0..1]	[185..1]
gi\|114593045, gi... - gi\|55622168\|ref\|XP_517086.1\| PREDICTED: brain neuron cytoplasmic protein 1 isoform 8 [Pan troglodyte... NSG1_PONAB - Neuron-specific protein family member 1 OS=Pongo abelii GN=NSG1 PE=2 SV=1 ENSCJAT00000000249 - null MIM:607645\|Ensem... - segment on chromosome 4 (unique) 234 expressed sequence NSG1_PONPY - Neuron-specific protein family member 1 - Pongo pygmaeus (Orangutan) NSG1_MACFA - Neuron-specific protein family member 1 OS=Macaca fascicularis GN=NSG1 PE=2 SV=1 gi\|208966856 - gi\|208966856\|dbj\|BAG73442.1\| Neuron-specific protein family member 1 [synthetic construct] gi\|109073718, gi... - gi\|109073720\|ref\|XP_001095887.1\| PREDICTED: DNA segment on chromosome 4 (unique) 234 expressed seque... gi\|193787683, gi... - gi\|91932788\|ref\|NP_001035190.1\| brain neuron cytoplasmic protein 1 [Homo sapiens], gi\|7657003\|ref\|NP...	347.0	[0..1]	[185..1]
gi\|118403878, gi... - gi\|195539948\|gb\|AAI67929.1\| Hypothetical protein MGC145190 [Xenopus tropicalis], gi\|118403878\|ref\|NP...	341.0	[0..1]	[185..1]
gi\|114593054 - gi\|114593054\|ref\|XP_001154503.1\| PREDICTED: brain neuron cytoplasmic protein 1 isoform 1 [Pan troglo... gi\|109073722 - gi\|109073722\|ref\|XP_001095350.1\| PREDICTED: DNA segment on chromosome 4 (unique) 234 expressed seque...	320.0	[0..1]	[185..1]
gi\|114593056 - gi\|114593056\|ref\|XP_001154619.1\| PREDICTED: similar to 21 kDa protein isoform 2 [Pan troglodytes]	293.0	[0..28]	[185..1]

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Predicted Domain #1

Region A:
Residues: [1-185]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVKLGNNFAE KGTKQPLLED GFDTIPLMTP LDVNQLQFPP PDKVVVKTKT EYEPDRKKGK  60
   61 ARPPKIAEFT VSITEGVTER FKVSVLVLFA LAFLTCVVFL VVYKVYKYDR ACPDGFVLKN 120
  121 TQCIPEGLES YYTEQDSSAR EKFYTVINHY NVAKQSITRS VSPWMSVLSE EKLSEQETEA 180
  181 AEKSA

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	144.769551
Match:	PF06387.2
Description:	No description for PF06387.2 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits