YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|108813295, gi...
Organism:	Yersinia pestis Nepal516
Length:	294 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|108813295, gi....

Description	E-value	Query Range	Subject Range
gi\|49613720, gi\|... - gi\|50123194\|ref\|YP_052361.1\| putative carbon-nitrogen hydrolase [Pectobacterium atrosepticum SCRI104...	1.0E-83	[1..294]	[1..294]
gi\|77961496, gi\|... - gi\|77961496\|ref\|ZP_00825332.1\| COG0388: Predicted amidohydrolase [Yersinia mollaretii ATCC 43969], g...	5.0E-83	[1..294]	[1..294]
gi\|77974463, gi\|... - gi\|77974463\|ref\|ZP_00830003.1\| COG0388: Predicted amidohydrolase [Yersinia frederiksenii ATCC 33641]...	8.0E-83	[1..294]	[1..294]
gi\|77976498, gi\|... - gi\|77976498\|ref\|ZP_00831984.1\| COG0388: Predicted amidohydrolase [Yersinia intermedia ATCC 29909], g...	1.0E-82	[1..294]	[1..294]
gi\|77382601, gi\|... - gi\|77458598\|ref\|YP_348103.1\| Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase [Pseud...	3.0E-79	[1..291]	[1..291]
gi\|82723767, gi\|... - gi\|82748375\|ref\|ZP_00910860.1\| probable hydratase [Clostridium beijerincki NCIMB 8052], gi\|82723767\|...	1.0E-78	[1..290]	[1..287]
gi\|91223883, gi\|... - gi\|91223883\|ref\|ZP_01259147.1\| putative carbon-nitrogen hydrolase [Vibrio alginolyticus 12G01], gi\|9...	3.0E-78	[1..285]	[1..283]
gi\|28806766 - gi\|28806766\|dbj\|BAC60037.1\| putative carbon-nitrogen hydrolase [Vibrio parahaemolyticus RIMD 2210633... gi\|28806766, gi\|... - gi\|28898548\|ref\|NP_798153.1\| putative carbon-nitrogen hydrolase [Vibrio parahaemolyticus RIMD 221063... gi\|149750419, gi... - gi\|153836144\|ref\|ZP_01988811.1\| hydrolase, carbon-nitrogen family [Vibrio parahaemolyticus AQ3810], ...	4.0E-78	[1..285]	[1..283]
gi\|77956181, gi\|... - gi\|77956181\|ref\|ZP_00820309.1\| COG0388: Predicted amidohydrolase [Yersinia bercovieri ATCC 43970], g...	9.0E-78	[11..294]	[1..284]
gi\|95112576 - gi\|95112576\|emb\|CAK17304.1\| putative carbon-nitrogen hydrolase [Pseudomonas entomophila L48] gi\|95112576, gi\|... - gi\|95112576\|emb\|CAK17304.1\| putative carbon-nitrogen hydrolase [Pseudomonas entomophila L48], gi\|104...	1.0E-77	[1..292]	[1..292]

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Predicted Domain #1

Region A:
Residues: [1-294]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTKVTVAATQ MACSWDLPKN IENAEKLVRQ AHAKGAQIIL IQELFAAPYF CIDQSPEHYA  60
   61 LAQELDNSPL IKHFSKLAAE LEVVLPLSFF EKANNAYYNS LVMIDADGSV LDVYRKTHIP 120
  121 NGPAYQEKQF FIPGDTGFKV WQTRYAKVGV GICWDQWFPE TARSLALLGA EVIFYPTAIG 180
  181 SEPAYPEIDS QPHWTRVQQG HAAANLVPVI ASNRIGTEKS KYIDGLEMTF YGSSFIADQT 240
  241 GALLAQANKT DEAVLVHEFD LQEIAAQRAS WGLFRDRRPE MYQTLATSDG KTRR

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	60.045757
Match:	1j31A
Description:	Crystal Structure of Hypothetical Protein PH0642 from Pyrococcus horikoshii
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
catalytic activity	1.64442398754697	bayes_pls_golite062009
hydrolase activity, acting on carbon-nitrogen (but not peptide) bonds	1.35962310800332	bayes_pls_golite062009
N-carbamoylputrescine amidase activity	0.749539597459006	bayes_pls_golite062009
hydrolase activity	0.06604196264626	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: