YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|229904136, gi...
Organism:	Yersinia pestis Nepal516
Length:	93 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|229904136, gi....

Description	E-value	Query Range	Subject Range
gi\|213646653 - gi\|213646653\|ref\|ZP_03376706.1\| hypothetical protein SentesTy_04600 [Salmonella enterica subsp. ente... gi\|213857725 - gi\|213857725\|ref\|ZP_03384696.1\| hypothetical protein SentesT_21580 [Salmonella enterica subsp. enter... gi\|214000994 - gi\|214000994\|ref\|ZP_03411729.1\| hypothetical protein Salmonellentericaenterica_10720 [Salmonella ent... gi\|62181871, gi\|... - gi\|62181871\|ref\|YP_218288.1\| hypothetical protein SC3301 [Salmonella enterica subsp. enterica serova... gi\|168245040, gi... - gi\|205336171\|gb\|EDZ22935.1\| barstar [Salmonella enterica subsp. enterica serovar Heidelberg str. SL4... gi\|56415290, gi\|... - gi\|56415290\|ref\|YP_152365.1\| hypothetical protein SPA3230 [Salmonella enterica subsp. enterica serov... gi\|168262616, gi... - gi\|205348583\|gb\|EDZ35214.1\| barstar [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P06... gi\|168822741, gi... - gi\|205340905\|gb\|EDZ27669.1\| barstar [Salmonella enterica subsp. enterica serovar Weltevreden str. HI... gi\|194446672, gi... - gi\|194446672\|ref\|YP_002042618.1\| barstar [Salmonella enterica subsp. enterica serovar Newport str. S... gi\|161616382, gi... - gi\|161616382\|ref\|YP_001590347.1\| hypothetical protein SPAB_04191 [Salmonella enterica subsp. enteric... gi\|205328119, gi... - gi\|205328119\|gb\|EDZ14883.1\| barstar [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. C... gi\|168233946, gi... - gi\|205332032\|gb\|EDZ18796.1\| barstar [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 1... gi\|197287889, gi... - gi\|197287889\|gb\|EDY27277.1\| barstar [Salmonella enterica subsp. enterica serovar Schwarzengrund str.... gi\|213052255 - gi\|213052255\|ref\|ZP_03345133.1\| hypothetical protein Salmoneentericaenterica_04552 [Salmonella enter... gi\|213425844 - gi\|213425844\|ref\|ZP_03358594.1\| hypothetical protein SentesTyphi_09429 [Salmonella enterica subsp. e... gi\|213583118 - gi\|213583118\|ref\|ZP_03364944.1\| hypothetical protein SentesTyph_18688 [Salmonella enterica subsp. en... gi\|213618916 - gi\|213618916\|ref\|ZP_03372742.1\| hypothetical protein SentesTyp_21605 [Salmonella enterica subsp. ent... gi\|204319899, gi... - gi\|204931132\|ref\|ZP_03221926.1\| barstar [Salmonella enterica subsp. enterica serovar Javiana str. GA... gi\|205274045, gi... - gi\|205354264\|ref\|YP_002228065.1\| hypothetical protein SG3253 [Salmonella enterica subsp. enterica se... gi\|207858611, gi... - gi\|207858611\|ref\|YP_002245262.1\| hypothetical protein SEN3196 [Salmonella enterica subsp. enterica s... gi\|238913556 - gi\|238913556\|ref\|ZP_04657393.1\| hypothetical protein SentesTe_20838 [Salmonella enterica subsp. ente... gi\|213022798 - gi\|213022798\|ref\|ZP_03337245.1\| hypothetical protein Salmonelentericaenterica_09323 [Salmonella ente... lcl\|NC_016856.1_... - [gene=yhcO] [protein=putative cytoplasmic protein] [protein_id=YP_005239549.1] [location=complement(... gi\|16421923, gi\|... - gi\|16766658\|ref\|NP_462273.1\| putative cytoplasmic protein [Salmonella typhimurium LT2], gi\|16421923\|... gi\|197241140, gi... - gi\|197262885\|ref\|ZP_03162959.1\| barstar [Salmonella enterica subsp. enterica serovar Saintpaul str. ... gi\|29139246, gi\|... - gi\|29143611\|ref\|NP_806953.1\| hypothetical protein t3278 [Salmonella enterica subsp. enterica serovar... gi\|197364220, gi... - gi\|197364220\|ref\|YP_002143857.1\| hypothetical protein SSPA3016 [Salmonella enterica subsp. enterica ... gi\|198243604, gi... - gi\|198243604\|ref\|YP_002217332.1\| barstar [Salmonella enterica subsp. enterica serovar Dublin str. CT... gi\|25513222, gi\|... - gi\|25513222\|pir\|\|AH0910 conserved hypothetical protein STY3544 [imported] - Salmonella enterica subs... gi\|200386791, gi... - gi\|200386791\|ref\|ZP_03213403.1\| barstar [Salmonella enterica subsp. enterica serovar Virchow str. SL... gi\|194450085, gi... - gi\|194450085\|ref\|YP_002047391.1\| barstar [Salmonella enterica subsp. enterica serovar Heidelberg str... gi\|194469260, gi... - gi\|194469260\|ref\|ZP_03075244.1\| barstar [Salmonella enterica subsp. enterica serovar Kentucky str. C... gi\|16762122 - gi\|16762122\|ref\|NP_457739.1\| hypothetical protein STY3544 [Salmonella enterica subsp. enterica serov... gi\|194737005, gi... - gi\|194737005\|ref\|YP_002116311.1\| barstar [Salmonella enterica subsp. enterica serovar Schwarzengrund... gi\|197250714, gi... - gi\|197250714\|ref\|YP_002148287.1\| barstar [Salmonella enterica subsp. enterica serovar Agona str. SL4...	4.0E-20	[1..87]	[1..88]
gi\|83585390, gi\|... - gi\|83585390\|ref\|ZP_00924036.1\| COG2732: Barstar, RNAse (barnase) inhibitor [Escherichia coli 101-1],... gi\|81242695, gi\|... - gi\|82778547\|ref\|YP_404896.1\| hypothetical protein SDY_3415 [Shigella dysenteriae Sd197], gi\|81242695... gi\|218706853, gi... - gi\|218706853\|ref\|YP_002414372.1\| putative barnase inhibitor [Escherichia coli UMN026], gi\|218433950\|... gi\|170518143, gi... - gi\|170680425\|ref\|YP_001745511.1\| hypothetical protein EcSMS35_3535 [Escherichia coli SMS-3-5], gi\|17... gi\|253771931, gi... - gi\|254289926\|ref\|YP_003055674.1\| predicted barnase inhibitor [Escherichia coli BL21(DE3)], gi\|253979... gi\|251786503, gi... - gi\|251786503\|ref\|YP_003000807.1\| hypothetical protein B21_03050 [Escherichia coli BL21], gi\|24237877... gi\|254163176, gi... - gi\|254163176\|ref\|YP_003046284.1\| predicted barnase inhibitor [Escherichia coli B str. REL606], gi\|25...	1.0E-19	[1..87]	[1..88]
gi\|110643474, gi... - gi\|110643474\|ref\|YP_671204.1\| hypothetical protein ECP_3323 [Escherichia coli 536], gi\|110345066\|gb\|... gi\|189358388, gi... - gi\|189358388\|gb\|EDU76807.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4401], g... gi\|168752148, gi... - gi\|188013940\|gb\|EDU52062.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4113], g... YHCO_ECOL6 - Uncharacterized protein YhcO OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) GN=yhcO ... gi\|168769095, gi... - gi\|189361732\|gb\|EDU80151.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4486], g... gi\|168763776, gi... - gi\|189366131\|gb\|EDU84547.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4501], g... gi\|12517860, gi\|... - gi\|15803773\|ref\|NP_289807.1\| hypothetical protein Z4598 [Escherichia coli O157:H7 EDL933], gi\|125178... EG12821 - putative barnase inhibitor / Predicted barnase inhibitor gi\|208739974, gi... - gi\|208819851\|ref\|ZP_03260171.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4042... gi\|208733808, gi... - gi\|208812531\|ref\|ZP_03253860.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4045... gi\|209913968, gi... - gi\|209920709\|ref\|YP_002294793.1\| hypothetical protein ECSE_3518 [Escherichia coli SE11], gi\|20991396... gi\|117625523, gi... - gi\|117625523\|ref\|YP_858846.1\| hypothetical protein APECO1_3205 [Escherichia coli APEC O1], gi\|115514... gi\|209396510, gi... - gi\|209396510\|ref\|YP_002272702.1\| hypothetical protein ECH74115_4556 [Escherichia coli O157:H7 str. E... gi\|124500536, gi... - gi\|124528513\|ref\|ZP_01699802.1\| conserved hypothetical protein [Escherichia coli B], gi\|124500536\|gb... gi\|217319807, gi... - gi\|217327440\|ref\|ZP_03443523.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. TW1458... gi\|215488547, gi... - gi\|215488547\|ref\|YP_002330978.1\| predicted barnase inhibitor [Escherichia coli O127:H6 str. E2348/69... gi\|218367070, gi... - gi\|218560301\|ref\|YP_002393214.1\| putative barnase inhibitor [Escherichia coli S88], gi\|218367070\|emb... gi\|218555803, gi... - gi\|218555803\|ref\|YP_002388716.1\| putative barnase inhibitor [Escherichia coli IAI1], gi\|218362571\|em... gi\|168781383, gi... - gi\|189001110\|gb\|EDU70096.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4076], g... gi\|187767172, gi... - gi\|187767172\|gb\|EDU31016.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4196], g... gi\|168800952, gi... - gi\|189376824\|gb\|EDU95240.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC508], gi... gi\|168786125, gi... - gi\|189373819\|gb\|EDU92235.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC869], gi... gi\|170082771, gi... - gi\|170082771\|ref\|YP_001732091.1\| barnase inhibitor [Escherichia coli str. K-12 substr. DH10B], gi\|16... gi\|170018517, gi... - gi\|170018517\|ref\|YP_001723471.1\| hypothetical protein EcolC_0467 [Escherichia coli ATCC 8739], gi\|16... gi\|208726652, gi... - gi\|208806851\|ref\|ZP_03249188.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4206... gi\|195939437 - gi\|195939437\|ref\|ZP_03084819.1\| barnase inhibitor [Escherichia coli O157:H7 str. EC4024] gi\|89110001, gi\|... - gi\|89110001\|ref\|AP_003781.1\| predicted barnase inhibitor [Escherichia coli str. K-12 substr. W3110],... gi\|75234853, gi\|... - gi\|75234853\|ref\|ZP_00719144.1\| COG2732: Barstar, RNAse (barnase) inhibitor [Escherichia coli E110019... gi\|190905897, gi... - gi\|75237906\|ref\|ZP_00721917.1\| COG2732: Barstar, RNAse (barnase) inhibitor [Escherichia coli F11], g... gi\|194429140, gi... - gi\|75209676\|ref\|ZP_00709888.1\| COG2732: Barstar, RNAse (barnase) inhibitor [Escherichia coli B171], ... gi\|190901784, gi... - gi\|75228635\|ref\|ZP_00715260.1\| COG2732: Barstar, RNAse (barnase) inhibitor [Escherichia coli B7A], g... gi\|73857247, gi\|... - gi\|74313770\|ref\|YP_312189.1\| hypothetical protein SSON_3381 [Shigella sonnei Ss046], gi\|73857247\|gb\|... gi\|81246943, gi\|... - gi\|82545532\|ref\|YP_409479.1\| hypothetical protein SBO_3150 [Shigella boydii Sb227], gi\|81246943\|gb\|A... gi\|192927004, gi... - gi\|75256609\|ref\|ZP_00728239.1\| COG2732: Barstar, RNAse (barnase) inhibitor [Escherichia coli E22], g... gi\|75511865, gi\|... - gi\|75511865\|ref\|ZP_00734477.1\| COG2732: Barstar, RNAse (barnase) inhibitor [Escherichia coli 53638],... gi\|157156620, gi... - gi\|75188039\|ref\|ZP_00701306.1\| COG2732: Barstar, RNAse (barnase) inhibitor [Escherichia coli E24377A... gi\|75197182, gi\|... - gi\|75197182\|ref\|ZP_00707252.1\| COG2732: Barstar, RNAse (barnase) inhibitor [Escherichia coli HS], gi... gi\|187427477, gi... - gi\|75176075\|ref\|ZP_00696243.1\| COG2732: Barstar, RNAse (barnase) inhibitor [Shigella boydii BS512], ... gi\|91212659, gi\|... - gi\|91212659\|ref\|YP_542645.1\| hypothetical protein UTI89_C3670 [Escherichia coli UTI89], gi\|91074233\|... gi\|13363585, gi\|... - gi\|15833366\|ref\|NP_312139.1\| hypothetical protein ECs4112 [Escherichia coli O157:H7 str. Sakai], gi\|... gi\|227887954, gi... - gi\|227887954\|ref\|ZP_04005759.1\| barstar family protein ribonuclease (barnase) inhibitor [Escherichia... gi\|237706014, gi... - gi\|237706014\|ref\|ZP_04536495.1\| conserved hypothetical protein [Escherichia sp. 3_2_53FAA], gi\|22689... gi\|238902340, gi... - gi\|238902340\|ref\|YP_002928136.1\| putative barnase inhibitor [Escherichia coli BW2952], gi\|238862176\|... gi\|226840023, gi... - gi\|254038399\|ref\|ZP_04872457.1\| conserved hypothetical protein [Escherichia sp. 1_1_43], gi\|22684002... gi\|254594582, gi... - gi\|254795182\|ref\|YP_003080019.1\| predicted barnase inhibitor [Escherichia coli O157:H7 str. TW14359]... EG12821 - putative barnase inhibitor / Predicted barnase inhibitor YHCO_ECOLI - Hypothetical protein yhcO - Escherichia coli YHCO_ECOL6 - Uncharacterized protein yhcO OS=Escherichia coli O6 GN=yhcO PE=3 SV=1 YHCO_ECO57 - Uncharacterized protein YhcO OS=Escherichia coli O157:H7 GN=yhcO PE=1 SV=1 gi\|218371990, gi... - gi\|218702004\|ref\|YP_002409633.1\| putative barnase inhibitor [Escherichia coli IAI39], gi\|218371990\|e... gi\|218696938, gi... - gi\|218696938\|ref\|YP_002404605.1\| putative barnase inhibitor [Escherichia coli 55989], gi\|218353670\|e...	1.0E-19	[1..87]	[1..88]
gi\|20148764 - gi\|20148764\|gb\|AAM10782.1\| barstar [yeast mitochondrial synthetic construct] BARS_BACAM - Barstar OS=Bacillus amyloliquefaciens PE=1 SV=3 gi\|30014062 - gi\|30014062\|gb\|AAO92245.1\| barnase inhibitor [Cloning vector pHR28A10] gi\|30984053, gi\|... - gi\|30984055\|gb\|AAP41140.1\| barnase inhibitor [Cloning vector pHRBar-6], gi\|30984053\|gb\|AAP41138.1\| b...	2.0E-19	[1..78]	[1..81]
gi\|110807101, gi... - gi\|110807101\|ref\|YP_690621.1\| hypothetical protein SFV_3266 [Shigella flexneri 5 str. 8401], gi\|1106... gi\|24114526, gi\|... - gi\|24114526\|ref\|NP_709036.1\| hypothetical protein SF3279 [Shigella flexneri 2a str. 301], gi\|2405371... gi\|30064571, gi\|... - gi\|30064571\|ref\|NP_838742.1\| hypothetical protein S3494 [Shigella flexneri 2a str. 2457T], gi\|300428...	6.0E-19	[1..87]	[1..88]
gi\|113527881, gi... - gi\|113869105\|ref\|YP_727594.1\| hypothetical protein H16_A3151 [Ralstonia eutropha H16], gi\|113527881\|...	2.0E-18	[4..87]	[107..201]

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Predicted Domain #1

Region A:
Residues: [1-93]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVKVVFDFNH IPDLPAFYRA FSQNFALSED FGANLDALWD VVTGEIALPV EIEFVHFSRR  60
   61 HQRRFAAIVL LLEEAEEELA GRLHFNVVDE HIV

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	21.221849
Match:	2cx6A
Description:	Crystal structure of ribonuclease inhibitor Barstar
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits