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View Structure Prediction Details

Protein: gi|108809671, gi...
Organism: Yersinia pestis Antiqua
Length: 162 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|108809671, gi....

Description E-value Query
Range
Subject
Range
gi|84363249 - gi|84363249|ref|ZP_00987845.1| COG1792: Cell shape-determining protein [Burkholderia dolosa AUO158]
3.0E-43 [8..158] [379..527]
gi|77973455 - gi|77973455|ref|ZP_00829003.1| COG2891: Cell shape-determining protein [Yersinia frederiksenii ATCC ...
1.0E-38 [1..162] [1..162]
gi|37527916, gi|... - gi|37527916|ref|NP_931261.1| rod shape-determining protein MreD [Photorhabdus luminescens subsp. lau...
1.0E-38 [1..162] [1..162]
gi|77958849 - gi|77958849|ref|ZP_00822876.1| COG2891: Cell shape-determining protein [Yersinia bercovieri ATCC 439...
2.0E-38 [1..162] [1..162]
gi|77978747 - gi|77978747|ref|ZP_00834172.1| COG2891: Cell shape-determining protein [Yersinia intermedia ATCC 299...
3.0E-38 [1..162] [1..162]
gi|50119229, gi|... - gi|50119229|ref|YP_048396.1| rod shape-determining protein MreD [Pectobacterium atrosepticum SCRI104...
2.0E-37 [1..162] [1..162]
gi|200387873, gi... - gi|200387873|ref|ZP_03214485.1| rod shape-determining protein MreD [Salmonella enterica subsp. enter...
gi|198245977, gi... - gi|198245977|ref|YP_002217341.1| rod shape-determining protein MreD [Salmonella enterica subsp. ente...
gi|197095706, gi... - gi|197364229|ref|YP_002143866.1| rod shape-determining protein MreD [Salmonella enterica subsp. ente...
gi|197243139, gi... - gi|197264884|ref|ZP_03164958.1| rod shape-determining protein MreD [Salmonella enterica subsp. enter...
gi|213028133 - gi|213028133|ref|ZP_03342580.1| rod shape-determining protein MreD [Salmonella enterica subsp. enter...
gi|207858620, gi... - gi|207858620|ref|YP_002245271.1| rod shape-determining protein MreD [Salmonella enterica subsp. ente...
gi|205274054, gi... - gi|205354273|ref|YP_002228074.1| rod shape-determining protein MreD [Salmonella enterica subsp. ente...
gi|204319954, gi... - gi|204931187|ref|ZP_03221981.1| rod shape-determining protein MreD [Salmonella enterica subsp. enter...
gi|195633161, gi... - gi|195633161|gb|EDX51575.1| rod shape-determining protein MreD [Salmonella enterica subsp. enterica ...
gi|205336192, gi... - gi|205336192|gb|EDZ22956.1| rod shape-determining protein MreD [Salmonella enterica subsp. enterica ...
gi|197287898, gi... - gi|197287898|gb|EDY27286.1| rod shape-determining protein MreD [Salmonella enterica subsp. enterica ...
gi|168233955, gi... - gi|205332043|gb|EDZ18807.1| rod shape-determining protein MreD [Salmonella enterica subsp. enterica ...
gi|194737883, gi... - gi|194737883|ref|YP_002116320.1| rod shape-determining protein MreD [Salmonella enterica subsp. ente...
gi|194472772, gi... - gi|194472772|ref|ZP_03078756.1| rod shape-determining protein MreD [Salmonella enterica subsp. enter...
gi|194448297, gi... - gi|194448297|ref|YP_002047400.1| rod shape-determining protein MreD [Salmonella enterica subsp. ente...
gi|194445836, gi... - gi|194445836|ref|YP_002042627.1| rod shape-determining protein MreD [Salmonella enterica subsp. ente...
gi|16421932, gi|... - gi|16766667|ref|NP_462282.1| rod shape-determining protein MreD [Salmonella typhimurium LT2], gi|164...
gi|213647006 - gi|213647006|ref|ZP_03377059.1| rod shape-determining protein MreD [Salmonella enterica subsp. enter...
gi|29139255, gi|... - gi|29143620|ref|NP_806962.1| rod shape-determining protein MreD [Salmonella enterica subsp. enterica...
gi|56129556, gi|... - gi|56415299|ref|YP_152374.1| rod shape-determining protein MreD [Salmonella enterica subsp. enterica...
gi|213582027 - gi|213582027|ref|ZP_03363853.1| rod shape-determining protein MreD [Salmonella enterica subsp. enter...
gi|213428312 - gi|213428312|ref|ZP_03361062.1| rod shape-determining protein MreD [Salmonella enterica subsp. enter...
gi|25355498, gi|... - gi|25355498|pir||AI0911 rod shape-determining protein [imported] - Salmonella enterica subsp. enteri...
gi|213051959 - gi|213051959|ref|ZP_03344837.1| rod shape-determining protein MreD [Salmonella enterica subsp. enter...
gi|16762131 - gi|16762131|ref|NP_457748.1| rod shape-determining protein MreD [Salmonella enterica subsp. enterica...
gi|214002741 - gi|214002741|ref|ZP_03413476.1| rod shape-determining protein MreD [Salmonella enterica subsp. enter...
gi|213859944 - gi|213859944|ref|ZP_03385648.1| rod shape-determining protein MreD [Salmonella enterica subsp. enter...
gi|167993956, gi... - gi|205328087|gb|EDZ14851.1| rod shape-determining protein MreD [Salmonella enterica subsp. enterica ...
gi|205322521, gi... - gi|205322521|gb|EDZ10360.1| rod shape-determining protein MreD [Salmonella enterica subsp. enterica ...
gi|161616391, gi... - gi|161616391|ref|YP_001590356.1| rod shape-determining protein MreD [Salmonella enterica subsp. ente...
lcl|NC_016856.1_... - [gene=mreD] [protein=rod shape-determining protein MreD] [protein_id=YP_005239558.1] [location=compl...
4.0E-36 [1..162] [2..163]
gi|62181880, gi|... - gi|62181880|ref|YP_218297.1| rod shape-determining protein MreD [Salmonella enterica subsp. enterica...
5.0E-36 [1..162] [2..163]
gi|82545522, gi|... - gi|82545522|ref|YP_409469.1| rod shape-determining protein MreD [Shigella boydii Sb227], gi|81246933...
1.0E-35 [1..162] [1..162]
gi|82778556, gi|... - gi|82778556|ref|YP_404905.1| rod shape-determining protein MreD [Shigella dysenteriae Sd197], gi|812...
2.0E-35 [1..162] [1..162]

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Predicted Domain #1
Region A:
Residues: [1-162]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MNRYSSHGRW VIWLSFLIAM VLQIMPWPEQ IYMFRPSWLA LVLIYWVMAL PHRVNVGTGF  60
   61 ILGLIMDLIL GSTLGVRALA FSIIAYLVAF KFQLFRNMAL WQQALIVMLL SLTMDVVVFW 120
  121 SEFLVINVAF RPEVFWSSVV NGILWPWLFL LMRKIRRQFS VQ

[Run NCBI BLAST on this sequence.]

Detection Method: Pfam
Confidence: 56.086186
Match: PF04093.3
Description: No description for PF04093.3 was found.

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle