YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|108808940, gi...
Organism:	Yersinia pestis Antiqua
Length:	152 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|108808940, gi....

Description	E-value	Query Range	Subject Range
gi\|16505576, gi\|... - gi\|25302798\|pir\|\|AC1060 conserved hypothetical protein STY4806 [imported] - Salmonella enterica subs... gi\|16763268 - gi\|16763268\|ref\|NP_458885.1\| hypothetical protein STY4806 [Salmonella enterica subsp. enterica serov... gi\|29140386, gi\|... - gi\|29144747\|ref\|NP_808089.1\| hypothetical protein t4502 [Salmonella enterica subsp. enterica serovar... gi\|213427646 - gi\|213427646\|ref\|ZP_03360396.1\| hypothetical protein SentesTyphi_19892 [Salmonella enterica subsp. e... gi\|213585893 - gi\|213585893\|ref\|ZP_03367719.1\| hypothetical protein SentesTyph_33347 [Salmonella enterica subsp. en... gi\|213646814 - gi\|213646814\|ref\|ZP_03376867.1\| hypothetical protein SentesTy_05580 [Salmonella enterica subsp. ente... gi\|214000036 - gi\|214000036\|ref\|ZP_03410771.1\| hypothetical protein Salmonellentericaenterica_04927 [Salmonella ent... gi\|213161551 - gi\|213161551\|ref\|ZP_03347261.1\| hypothetical protein Salmoneentericaenterica_16642 [Salmonella enter...	1.0E-50	[1..150]	[1..148]
gi\|62130526, gi\|... - gi\|62182893\|ref\|YP_219310.1\| putative cytoplasmic protein [Salmonella enterica subsp. enterica serov... gi\|224586292, gi... - gi\|224586292\|ref\|YP_002640091.1\| hypothetical protein SPC_4601 [Salmonella enterica subsp. enterica ... gi\|168464651, gi... - gi\|195632851\|gb\|EDX51305.1\| putative cytoplasmic protein [Salmonella enterica subsp. enterica serova... gi\|161617761, gi... - gi\|161617761\|ref\|YP_001591727.1\| hypothetical protein SPAB_05624 [Salmonella enterica subsp. enteric...	1.0E-50	[1..150]	[1..148]
gi\|197365162, gi... - gi\|197365162\|ref\|YP_002144799.1\| hypothetical protein SSPA3965 [Salmonella enterica subsp. enterica ... gi\|56130496, gi\|... - gi\|56416239\|ref\|YP_153314.1\| hypothetical protein SPA4268 [Salmonella enterica subsp. enterica serov...	4.0E-50	[1..151]	[1..149]
lcl\|NC_016856.1_... - [gene=yjgK] [protein=putative cytoplasmic protein] [protein_id=YP_005240792.1] [location=4724054..47... gi\|16767713, gi\|... - gi\|16767713\|ref\|NP_463328.1\| putative cytoplasmic protein [Salmonella typhimurium LT2], gi\|16423032\|... gi\|205330395, gi... - gi\|205330395\|gb\|EDZ17159.1\| putative cytoplasmic protein [Salmonella enterica subsp. enterica serova...	7.0E-50	[1..150]	[1..148]
Q668K0\|Q668K0_YERPS - Putative uncharacterized protein - Yersinia pseudotuberculosis gi\|51590338, gi\|... - gi\|51597056\|ref\|YP_071247.1\| hypothetical protein YPTB2738 [Yersinia pseudotuberculosis IP 32953], g... gi\|77629785, gi\|... - gi\|77629785\|ref\|ZP_00792371.1\| COG2731: Beta-galactosidase, beta subunit [Yersinia pseudotuberculosi...	7.0E-49	[1..149]	[1..149]
gi\|162421818, gi... - gi\|77633122\|ref\|ZP_00795272.1\| COG2731: Beta-galactosidase, beta subunit [Yersinia pestis Angola], g... gi\|169750181, gi... - gi\|170023647\|ref\|YP_001720152.1\| hypothetical protein YPK_1405 [Yersinia pseudotuberculosis YPIII], ... gi\|186699166, gi... - gi\|186896140\|ref\|YP_001873252.1\| hypothetical protein YPTS_2838 [Yersinia pseudotuberculosis PB1/+],... gi\|145599401, gi... - gi\|145599401\|ref\|YP_001163477.1\| hypothetical protein YPDSF_2125 [Yersinia pestis Pestoides F], gi\|1... gi\|21958241, gi\|... - gi\|22125359\|ref\|NP_668782.1\| hypothetical protein y1462 [Yersinia pestis KIM], gi\|21958241\|gb\|AAM850... gi\|45442419, gi\|... - gi\|45442419\|ref\|NP_993958.1\| hypothetical protein YP_2643 [Yersinia pestis biovar Microtus str. 9100... gi\|165921266, gi... - gi\|165926915\|ref\|ZP_02222747.1\| conserved hypothetical protein [Yersinia pestis biovar Orientalis st... gi\|166011284, gi... - gi\|166011284\|ref\|ZP_02232182.1\| conserved hypothetical protein [Yersinia pestis biovar Antiqua str. ... gi\|166206538, gi... - gi\|166212607\|ref\|ZP_02238642.1\| conserved hypothetical protein [Yersinia pestis biovar Antiqua str. ... gi\|167051274, gi... - gi\|167398770\|ref\|ZP_02304294.1\| conserved hypothetical protein [Yersinia pestis biovar Antiqua str. ... gi\|167422683, gi... - gi\|167422683\|ref\|ZP_02314436.1\| conserved hypothetical protein [Yersinia pestis biovar Orientalis st... gi\|167424724, gi... - gi\|167424724\|ref\|ZP_02316477.1\| conserved hypothetical protein [Yersinia pestis biovar Mediaevalis s... gi\|167467539 - gi\|167467539\|ref\|ZP_02332243.1\| hypothetical protein YpesF_06519 [Yersinia pestis FV-1] gi\|229838612, gi... - gi\|229838612\|ref\|ZP_04458771.1\| putative sugar isomerase involved in processing of exogenous sialic ... gi\|165916022, gi... - gi\|89103943\|ref\|ZP_01176502.1\| COG2731: Beta-galactosidase, beta subunit [Yersinia pestis biovar Ori... gi\|229701486, gi... - gi\|229895680\|ref\|ZP_04510851.1\| putative sugar isomerase involved in processing of exogenous sialic ... gi\|108808201, gi... - gi\|108808201\|ref\|YP_652117.1\| hypothetical protein YPA_2207 [Yersinia pestis Antiqua], gi\|108780114\|... gi\|229899178, gi... - gi\|229899178\|ref\|ZP_04514321.1\| putative sugar isomerase involved in processing of exogenous sialic ... gi\|229901794, gi... - gi\|229901794\|ref\|ZP_04516916.1\| putative sugar isomerase involved in processing of exogenous sialic ...	9.0E-49	[1..149]	[1..149]
gi\|238716951, gi... - gi\|77960169\|ref\|ZP_00824057.1\| COG2731: Beta-galactosidase, beta subunit [Yersinia mollaretii ATCC 4...	3.0E-48	[1..149]	[1..149]
gi\|162419912, gi... - gi\|77634904\|ref\|ZP_00796996.1\| COG2731: Beta-galactosidase, beta subunit [Yersinia pestis Angola], g...	4.0E-48	[1..152]	[1..152]
gi\|14582514 - gi\|14582514\|gb\|AAK69522.1\|AF282849_3 YiaL [Klebsiella oxytoca]	6.0E-48	[1..151]	[1..151]
gi\|81243461, gi\|... - gi\|82779313\|ref\|YP_405662.1\| hypothetical protein SDY_4270 [Shigella dysenteriae Sd197], gi\|81243461...	6.0E-48	[1..150]	[4..151]

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Predicted Domain #1

Region A:
Residues: [1-152]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MIIGNIHHLA LLPYLPAQLR DAIEYVKSHI NADTPLGKHD IDGNNVFVLV SNDSTDLLEN  60
   61 RRAEYHAKYL DIQIILAGQE GMAFSNLPAG KPDTDWLADK DIAFLPAGTD EKHVVLQTGD 120
  121 FVVFFPGEVH KPLCAVGEPA NVRKAVVKIA VK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	41.221849
Match:	1jopA
Description:	Hypothetical protein HI0227
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
binding	0.515503587188715	bayes_pls_golite062009
catalytic activity	0.154892236593256	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: