YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|165913363, gi...
Organism:	Yersinia pestis biovar Orientalis str. IP275
Length:	106 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|165913363, gi....

Description	E-value	Query Range	Subject Range
gi\|77628853, gi\|... - gi\|77628853\|ref\|ZP_00791439.1\| COG3141: Uncharacterized protein conserved in bacteria [Yersinia pseu... gi\|169751204, gi... - gi\|170024670\|ref\|YP_001721175.1\| YebG family protein [Yersinia pseudotuberculosis YPIII], gi\|1697512...	129.0	[0..1]	[106..1]
gi\|24348650, gi\|... - gi\|24374147\|ref\|NP_718190.1\| hypothetical protein SO_2604 [Shewanella oneidensis MR-1], gi\|24348650\|... SO2604 - conserved hypothetical protein	121.0	[0..1]	[102..1]
gi\|77959085, gi\|... - gi\|77959085\|ref\|ZP_00823108.1\| COG3141: Uncharacterized protein conserved in bacteria [Yersinia berc...	116.0	[0..1]	[106..1]
gi\|78508988, gi\|... - gi\|78691601\|ref\|ZP_00856208.1\| conserved hypothetical protein [Shewanella sp. MR-7], gi\|78508988\|gb\|... gi\|82498119, gi\|... - gi\|82498119\|ref\|ZP_00883633.1\| conserved hypothetical protein [Shewanella sp. MR-4], gi\|82403868\|gb\|...	115.0	[0..1]	[102..1]
gi\|214002654 - gi\|214002654\|ref\|ZP_03413389.1\| DNA damage-inducible protein YebG [Salmonella enterica subsp. enteri... gi\|29137103, gi\|... - gi\|29141476\|ref\|NP_804818.1\| DNA damage-inducible protein YebG [Salmonella enterica subsp. enterica ... gi\|213426802 - gi\|213426802\|ref\|ZP_03359552.1\| DNA damage-inducible protein YebG [Salmonella enterica subsp. enteri... gi\|16760833 - gi\|16760833\|ref\|NP_456450.1\| DNA damage-inducible protein YebG [Salmonella enterica subsp. enterica ... gi\|213161273 - gi\|213161273\|ref\|ZP_03346983.1\| DNA damage-inducible protein YebG [Salmonella enterica subsp. enteri... gi\|25367917, gi\|... - gi\|25367917\|pir\|\|AF0741 conserved hypothetical protein STY2088 [imported] - Salmonella enterica subs... gi\|213973829 - gi\|213973829\|ref\|ZP_03401088.1\| DNA damage-inducible protein YebG [Salmonella enterica subsp. enteri... gi\|213857228 - gi\|213857228\|ref\|ZP_03384199.1\| DNA damage-inducible protein YebG [Salmonella enterica subsp. enteri... gi\|213618637 - gi\|213618637\|ref\|ZP_03372463.1\| DNA damage-inducible protein YebG [Salmonella enterica subsp. enteri... gi\|213586019 - gi\|213586019\|ref\|ZP_03367845.1\| DNA damage-inducible protein YebG [Salmonella enterica subsp. enteri...	114.0	[0..1]	[100..1]
gi\|238912059 - gi\|238912059\|ref\|ZP_04655896.1\| DNA damage-inducible protein YebG [Salmonella enterica subsp. enteri... lcl\|NC_016856.1_... - [gene=yebG] [protein=DNA damage-inducible protein YebG] [protein_id=YP_005237841.1] [location=comple... gi\|207856597, gi... - gi\|207856597\|ref\|YP_002243248.1\| DNA damage-inducible protein YebG [Salmonella enterica subsp. enter... gi\|224583615, gi... - gi\|224583615\|ref\|YP_002637413.1\| hypothetical protein SPC_1834 [Salmonella enterica subsp. enterica ... gi\|198244625, gi... - gi\|198244625\|ref\|YP_002215205.1\| DNA damage-inducible protein [Salmonella enterica subsp. enterica s... gi\|205352412, gi... - gi\|205352412\|ref\|YP_002226213.1\| DNA damage-inducible protein YebG [Salmonella enterica subsp. enter... gi\|197250840, gi... - gi\|197250840\|ref\|YP_002146141.1\| yebG protein [Salmonella enterica subsp. enterica serovar Agona str... gi\|197241960, gi... - gi\|197263705\|ref\|ZP_03163779.1\| DNA damage-inducible protein [Salmonella enterica subsp. enterica se... gi\|62180457, gi\|... - gi\|62180457\|ref\|YP_216874.1\| DNA damage-inducible protein YebG [Salmonella enterica subsp. enterica ... gi\|194455654, gi... - gi\|194469290\|ref\|ZP_03075274.1\| DNA damage-inducible protein [Salmonella enterica subsp. enterica se... gi\|194736396, gi... - gi\|194736396\|ref\|YP_002114917.1\| DNA damage-inducible protein [Salmonella enterica subsp. enterica s... gi\|194444152, gi... - gi\|194444152\|ref\|YP_002041147.1\| DNA damage-inducible protein [Salmonella enterica subsp. enterica s... gi\|194406027, gi... - gi\|194447723\|ref\|YP_002045935.1\| DNA damage-inducible protein YebG [Salmonella enterica subsp. enter... gi\|195634280, gi... - gi\|195634280\|gb\|EDX52632.1\| DNA damage-inducible protein [Salmonella enterica subsp. enterica serova... gi\|205342737, gi... - gi\|205342737\|gb\|EDZ29501.1\| DNA damage-inducible protein [Salmonella enterica subsp. enterica serova... gi\|168241506, gi... - gi\|205339350\|gb\|EDZ26114.1\| DNA damage-inducible protein [Salmonella enterica subsp. enterica serova... gi\|168259849, gi... - gi\|205350747\|gb\|EDZ37378.1\| DNA damage-inducible protein [Salmonella enterica subsp. enterica serova... gi\|168233696, gi... - gi\|205332305\|gb\|EDZ19069.1\| DNA damage-inducible protein [Salmonella enterica subsp. enterica serova... gi\|168238508, gi... - gi\|197288661\|gb\|EDY28036.1\| DNA damage-inducible protein [Salmonella enterica subsp. enterica serova... gi\|16420417, gi\|... - gi\|16765224\|ref\|NP_460839.1\| DNA damage-inducible protein YebG [Salmonella typhimurium LT2], gi\|1642... gi\|167552488, gi... - gi\|205322920\|gb\|EDZ10759.1\| DNA damage-inducible protein [Salmonella enterica subsp. enterica serova... gi\|167993857, gi... - gi\|205328201\|gb\|EDZ14965.1\| DNA damage-inducible protein [Salmonella enterica subsp. enterica serova...	114.0	[0..1]	[100..1]
gi\|217973078, gi... - gi\|217973078\|ref\|YP_002357829.1\| YebG family protein [Shewanella baltica OS223], gi\|217498213\|gb\|ACK... gi\|68520015, gi\|... - gi\|68542319\|ref\|ZP_00582052.1\| YebG [Shewanella baltica OS155], gi\|68520015\|gb\|EAN43531.1\| YebG [She...	114.0	[0..1]	[86..1]
gi\|82543672, gi\|... - gi\|82543672\|ref\|YP_407619.1\| DNA damage-inducible protein YebG [Shigella boydii Sb227], gi\|81245083\|...	114.0	[0..1]	[86..1]
gi\|77980070 - gi\|77980070\|ref\|ZP_00835485.1\| COG3141: Uncharacterized protein conserved in bacteria [Yersinia inte...	113.0	[0..1]	[106..1]
gi\|74311829, gi\|... - gi\|74311829\|ref\|YP_310248.1\| DNA damage-inducible protein YebG [Shigella sonnei Ss046], gi\|73855306\|... gi\|81240581, gi\|... - gi\|82776433\|ref\|YP_402782.1\| DNA damage-inducible protein YebG [Shigella dysenteriae Sd197], gi\|8124... gi\|75255863, gi\|... - gi\|75255863\|ref\|ZP_00727602.1\| COG3141: Uncharacterized protein conserved in bacteria [Escherichia c... gi\|188494367, gi... - gi\|75511819\|ref\|ZP_00734437.1\| COG3141: Uncharacterized protein conserved in bacteria [Escherichia c... YEBG_ECO57 - Uncharacterized protein YebG OS=Escherichia coli O157:H7 GN=yebG PE=4 SV=1 gi\|75190877, gi\|... - gi\|75190877\|ref\|ZP_00704144.1\| COG3141: Uncharacterized protein conserved in bacteria [Escherichia c... YEBG_ECOL6 - Uncharacterized protein YebG OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) GN=yebG ... gi\|157161316, gi... - gi\|75195913\|ref\|ZP_00705983.1\| COG3141: Uncharacterized protein conserved in bacteria [Escherichia c... gi\|15802261, gi\|... - gi\|15802261\|ref\|NP_288285.1\| DNA damage-inducible protein YebG [Escherichia coli O157:H7 EDL933], gi... EG11808 - DNA damage-inducible protein regulated by LexA / DNA damage-inducible gene, SOS regulon; requires H-... gi\|83585551, gi\|... - gi\|83585551\|ref\|ZP_00924195.1\| COG3141: Uncharacterized protein conserved in bacteria [Escherichia c... gi\|75235348, gi\|... - gi\|75235348\|ref\|ZP_00719574.1\| COG3141: Uncharacterized protein conserved in bacteria [Escherichia c... YEBG_ECOL6 - Uncharacterized protein yebG OS=Escherichia coli O6 GN=yebG PE=4 SV=1 gi\|191173002, gi... - gi\|75239731\|ref\|ZP_00723694.1\| COG3141: Uncharacterized protein conserved in bacteria [Escherichia c... gi\|75209106, gi\|... - gi\|75209106\|ref\|ZP_00709361.1\| COG3141: Uncharacterized protein conserved in bacteria [Escherichia c... gi\|75228298, gi\|... - gi\|75228298\|ref\|ZP_00714950.1\| COG3141: Uncharacterized protein conserved in bacteria [Escherichia c... gi\|209157585, gi... - gi\|209396185\|ref\|YP_002270930.1\| YebG protein [Escherichia coli O157:H7 str. EC4115], gi\|209157585\|g... gi\|209919214, gi... - gi\|209919214\|ref\|YP_002293298.1\| DNA damage-inducible protein YebG [Escherichia coli SE11], gi\|20991... gi\|124530958, gi... - gi\|124530958\|ref\|ZP_01701414.1\| YebG family protein [Escherichia coli B], gi\|124498853\|gb\|EAY46354.1... gi\|217328741, gi... - gi\|217328741\|ref\|ZP_03444822.1\| YebG protein [Escherichia coli O157:H7 str. TW14588], gi\|217318088\|g... gi\|218361190, gi... - gi\|218554422\|ref\|YP_002387335.1\| DNA damage-inducible protein YebG [Escherichia coli IAI1], gi\|21836... gi\|218558712, gi... - gi\|218558712\|ref\|YP_002391625.1\| DNA damage-inducible protein YebG [Escherichia coli S88], gi\|218365... gi\|218427350, gi... - gi\|218689786\|ref\|YP_002397998.1\| DNA damage-inducible protein YebG [Escherichia coli ED1a], gi\|21842... gi\|218352146, gi... - gi\|218695414\|ref\|YP_002403081.1\| DNA damage-inducible protein YebG [Escherichia coli 55989], gi\|2183... gi\|218699581, gi... - gi\|218699581\|ref\|YP_002407210.1\| DNA damage-inducible protein YebG [Escherichia coli IAI39], gi\|2183... gi\|170019807, gi... - gi\|170019807\|ref\|YP_001724761.1\| DNA damage-inducible protein YebG [Escherichia coli ATCC 8739], gi\|... gi\|170081504, gi... - gi\|170081504\|ref\|YP_001730824.1\| protein regulated by LexA [Escherichia coli str. K-12 substr. DH10B... EG11808 - DNA damage-inducible protein regulated by LexA / DNA damage-inducible gene, SOS regulon; requires H-... gi\|170517566, gi... - gi\|170679848\|ref\|YP_001743397.1\| YebG protein [Escherichia coli SMS-3-5], gi\|170517566\|gb\|ACB15744.1... gi\|194417825, gi... - gi\|194433953\|ref\|ZP_03066225.1\| YebG protein [Shigella dysenteriae 1012], gi\|194417825\|gb\|EDX33922.1... gi\|195939750 - gi\|195939750\|ref\|ZP_03085132.1\| DNA damage-inducible protein YebG [Escherichia coli O157:H7 str. EC4... gi\|208810762, gi... - gi\|208810762\|ref\|ZP_03252638.1\| YebG protein [Escherichia coli O157:H7 str. EC4206], gi\|208725278\|gb... gi\|208816526, gi... - gi\|208816526\|ref\|ZP_03257646.1\| YebG protein [Escherichia coli O157:H7 str. EC4045], gi\|208730869\|gb... gi\|208738321, gi... - gi\|208818198\|ref\|ZP_03258518.1\| YebG protein [Escherichia coli O157:H7 str. EC4042], gi\|208738321\|gb... gi\|254592872, gi... - gi\|254793472\|ref\|YP_003078309.1\| conserved protein regulated by LexA [Escherichia coli O157:H7 str. ... gi\|253973809, gi... - gi\|254161908\|ref\|YP_003045016.1\| conserved hypothetical protein regulated by LexA [Escherichia coli ... gi\|254288696, gi... - gi\|254288696\|ref\|YP_003054444.1\| conserved protein regulated by LexA [Escherichia coli BL21(DE3)], g... gi\|251785296, gi... - gi\|251785296\|ref\|YP_002999600.1\| hypothetical protein B21_01807 [Escherichia coli BL21], gi\|24237756... gi\|238860586, gi... - gi\|238901063\|ref\|YP_002926859.1\| hypothetical protein BWG_1662 [Escherichia coli BW2952], gi\|2388605... gi\|237705801, gi... - gi\|237705801\|ref\|ZP_04536282.1\| DNA damage-inducible protein YebG [Escherichia sp. 3_2_53FAA], gi\|22... gi\|227837298, gi... - gi\|227885725\|ref\|ZP_04003530.1\| DNA damage-inducible protein YebG [Escherichia coli 83972], gi\|22783... gi\|218432446, gi... - gi\|218705349\|ref\|YP_002412868.1\| DNA damage-inducible protein YebG [Escherichia coli UMN026], gi\|218... YEBG_ECOLI - Hypothetical protein yebG - Escherichia coli gi\|89108688, gi\|... - gi\|89108688\|ref\|AP_002468.1\| conserved hypothetical protein regulated by LexA [Escherichia coli str.... gi\|91211072, gi\|... - gi\|91211072\|ref\|YP_541058.1\| DNA damage-inducible protein YebG [Escherichia coli UTI89], gi\|91072646... gi\|15831812, gi\|... - gi\|15831812\|ref\|NP_310585.1\| DNA damage-inducible protein YebG [Escherichia coli O157:H7 str. Sakai]... gi\|188013990, gi... - gi\|188013990\|gb\|EDU52112.1\| YebG protein [Escherichia coli O157:H7 str. EC4113], gi\|168752100\|ref\|ZP... gi\|168758571, gi... - gi\|189354627\|gb\|EDU73046.1\| YebG protein [Escherichia coli O157:H7 str. EC4401], gi\|168758571\|ref\|ZP... gi\|168762358, gi... - gi\|189367357\|gb\|EDU85773.1\| YebG protein [Escherichia coli O157:H7 str. EC4501], gi\|168762358\|ref\|ZP... gi\|110641966, gi... - gi\|110641966\|ref\|YP_669696.1\| DNA damage-inducible protein YebG [Escherichia coli 536], gi\|110343558... gi\|189360276, gi... - gi\|189360276\|gb\|EDU78695.1\| YebG protein [Escherichia coli O157:H7 str. EC4486], gi\|168770830\|ref\|ZP... gi\|187767076, gi... - gi\|187767076\|gb\|EDU30920.1\| YebG protein [Escherichia coli O157:H7 str. EC4196], gi\|168777748\|ref\|ZP... gi\|188999458, gi... - gi\|188999458\|gb\|EDU68444.1\| YebG protein [Escherichia coli O157:H7 str. EC4076], gi\|168783148\|ref\|ZP... gi\|168802373, gi... - gi\|189375628\|gb\|EDU94044.1\| YebG protein [Escherichia coli O157:H7 str. EC508], gi\|168802373\|ref\|ZP_...	112.0	[0..1]	[94..1]

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Predicted Domain #1

Region A:
Residues: [1-106]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAVEIKFVVV RQGEEKMTFT TKKEADAYDK MLDLADNLSE WLSQAPLSLE EEQREALSFF  60
   61 LAENKEALGQ ILRGSTPVVA VDGPQKVQSE KNTAEKKSKP EENQAA

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	42.638272
Match:	PF07130.3
Description:	No description for PF07130.3 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits