YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|229681991, gi...
Organism:	Yersinia pestis Nepal516
Length:	145 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|229681991, gi....

Description	E-value	Query Range	Subject Range
gi\|152960063, gi... - gi\|77631559\|ref\|ZP_00794145.1\| COG3050: DNA polymerase III, psi subunit [Yersinia pseudotuberculosis... gi\|51588206, gi\|... - gi\|51594924\|ref\|YP_069115.1\| DNA polymerase III subunit psi [Yersinia pseudotuberculosis IP 32953], ... gi\|170025850, gi... - gi\|170025850\|ref\|YP_001722355.1\| DNA polymerase III subunit psi [Yersinia pseudotuberculosis YPIII],... Q66EW8\|Q66EW8_YERPS - DNA polymerase III, psi subunit - Yersinia pseudotuberculosis gi\|186893924, gi... - gi\|186893924\|ref\|YP_001871036.1\| DNA polymerase III subunit psi [Yersinia pseudotuberculosis PB1/+],...	6.0E-54	[1..145]	[1..145]
gi\|77973618, gi\|... - gi\|77973618\|ref\|ZP_00829164.1\| COG3050: DNA polymerase III, psi subunit [Yersinia frederiksenii ATCC...	2.0E-53	[1..145]	[1..145]
gi\|77959695 - gi\|77959695\|ref\|ZP_00823712.1\| COG3050: DNA polymerase III, psi subunit [Yersinia bercovieri ATCC 43...	3.0E-52	[1..145]	[1..145]
gi\|16423122, gi\|... - gi\|16767798\|ref\|NP_463413.1\| DNA polymerase III subunit psi [Salmonella typhimurium LT2], gi\|1642312... gi\|224470906, gi... - gi\|224586378\|ref\|YP_002640177.1\| DNA polymerase III subunit psi [Salmonella enterica subsp. enterica... gi\|205323133, gi... - gi\|205323133\|gb\|EDZ10972.1\| DNA polymerase III, psi subunit [Salmonella enterica subsp. enterica ser... gi\|205331347, gi... - gi\|205331347\|gb\|EDZ18111.1\| DNA polymerase III, psi subunit [Salmonella enterica subsp. enterica ser... lcl\|NC_016856.1_... - [gene=holD] [protein=DNA polymerase III subunit psi] [protein_id=YP_005240899.1] [location=4825102.....	1.0E-51	[1..145]	[1..145]
gi\|77960335 - gi\|77960335\|ref\|ZP_00824212.1\| COG3050: DNA polymerase III, psi subunit [Yersinia mollaretii ATCC 43...	2.0E-51	[1..145]	[1..145]
gi\|16505661, gi\|... - gi\|25288606\|pir\|\|AI1071 DNA polymerase III, psi chain [imported] - Salmonella enterica subsp. enteri... gi\|213650119 - gi\|213650119\|ref\|ZP_03380172.1\| DNA polymerase III subunit psi [Salmonella enterica subsp. enterica ... gi\|213854674 - gi\|213854674\|ref\|ZP_03382914.1\| DNA polymerase III subunit psi [Salmonella enterica subsp. enterica ... gi\|16763352 - gi\|16763352\|ref\|NP_458969.1\| DNA polymerase III subunit psi [Salmonella enterica subsp. enterica ser... gi\|214002593 - gi\|214002593\|ref\|ZP_03413328.1\| DNA polymerase III subunit psi [Salmonella enterica subsp. enterica ... gi\|29144830, gi\|... - gi\|29144830\|ref\|NP_808172.1\| DNA polymerase III subunit psi [Salmonella enterica subsp. enterica ser... gi\|213051999 - gi\|213051999\|ref\|ZP_03344877.1\| DNA polymerase III subunit psi [Salmonella enterica subsp. enterica ... gi\|213583007 - gi\|213583007\|ref\|ZP_03364833.1\| DNA polymerase III subunit psi [Salmonella enterica subsp. enterica ...	3.0E-51	[1..145]	[1..145]
gi\|197365254, gi... - gi\|197365254\|ref\|YP_002144891.1\| DNA polymerase III subunit psi [Salmonella enterica subsp. enterica... gi\|56130588, gi\|... - gi\|56416331\|ref\|YP_153406.1\| DNA polymerase III subunit psi [Salmonella enterica subsp. enterica ser...	3.0E-51	[1..145]	[1..145]
HOLD_ECOLI - DNA polymerase III subunit psi (EC 2.7.7.7) - Escherichia coli gi\|254164297, gi... - gi\|254164297\|ref\|YP_003047407.1\| DNA polymerase III subunit psi [Escherichia coli B str. REL606], gi... gi\|253774999, gi... - gi\|254291048\|ref\|YP_003056798.1\| DNA polymerase III subunit psi [Escherichia coli BL21(DE3)], gi\|253... gi\|89111079, gi\|... - gi\|89111079\|ref\|AP_004859.1\| DNA polymerase III, psi subunit [Escherichia coli str. K-12 substr. W31... EG11414 - DNA polymerase III, psi subunit / DNA polymerase, psi subunit, clamp loader complex subunit EG11414 - DNA polymerase III, psi subunit / DNA polymerase, psi subunit, clamp loader complex subunit gi\|218561547, gi... - gi\|218561547\|ref\|YP_002394460.1\| DNA polymerase III subunit psi [Escherichia coli S88], gi\|218368316... gi\|169891592, gi... - gi\|170083757\|ref\|YP_001733077.1\| DNA polymerase III, psi subunit [Escherichia coli str. K-12 substr.... gi\|238903458, gi... - gi\|238903458\|ref\|YP_002929254.1\| DNA polymerase III, psi subunit [Escherichia coli BW2952], gi\|23886...	3.0E-50	[1..137]	[1..137]
gi\|75198186, gi\|... - gi\|75198186\|ref\|ZP_00708256.1\| COG3050: DNA polymerase III, psi subunit [Escherichia coli HS], gi\|15... gi\|157157679, gi... - gi\|75189080\|ref\|ZP_00702347.1\| COG3050: DNA polymerase III, psi subunit [Escherichia coli E24377A], ... gi\|209915096, gi... - gi\|209921837\|ref\|YP_002295921.1\| DNA polymerase III subunit psi [Escherichia coli SE11], gi\|20991509...	7.0E-50	[1..137]	[1..137]
gi\|77977222 - gi\|77977222\|ref\|ZP_00832677.1\| COG3050: DNA polymerase III, psi subunit [Yersinia intermedia ATCC 29...	2.0E-49	[1..143]	[1..143]

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Predicted Domain #1

Region A:
Residues: [1-145]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASRRDLLLQ QLGITQWVLR RPAVLQGEIA IHLPEDTRLL IVAQQLPEHG DPLLCDVLRS  60
   61 LGLTPHQVYA LTPDQVAMLP EDTQCNSWRL GISEPLAVAG AQLHSPELAG LYQDAGAKRA 120
  121 LWQQICHYEA DFYPDASRSG HSIPN

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	40.0
Match:	1em8B
Description:	Crystal structure of chi and psi subunit heterodimer from DNA POL III
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits