YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|149023280, gi...
Organism:	Rattus norvegicus
Length:	231 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|149023280, gi....

Description	E-value	Query Range	Subject Range
gi\|5870129 - gi\|5870129\|gb\|AAD54488.1\| small nuclear ribonucleoprotein B [Homo sapiens]	6.0E-40	[1..211]	[1..214]
gi\|112305, gi\|206694 - gi\|206694\|gb\|AAA42059.1\| snRNP-associated polypeptide N, pir\|\|A35448 small nuclear ribonucleoprotein...	5.0E-35	[1..214]	[1..214]
gi\|114656016 - gi\|114656016\|ref\|XP_523182.2\| PREDICTED: hypothetical protein [Pan troglodytes]	2.0E-34	[1..213]	[38..250]
gi\|57045593, gi\|... - gi\|73950980\|ref\|XP_848476.1\| PREDICTED: similar to small nuclear ribonucleoparticle-associated prote... gi\|149691049 - gi\|149691049\|ref\|XP_001492752.1\| PREDICTED: similar to small nuclear ribonucleoprotein polypeptide N...	6.0E-33	[1..213]	[1..213]
RSMB_MACEU - Small nuclear ribonucleoprotein-associated protein B' OS=Macropus eugenii GN=SNRPB PE=2 SV=1	1.0E-32	[1..167]	[1..167]
RSMN_BOVIN - Small nuclear ribonucleoprotein-associated protein N OS=Bos taurus GN=SNRPN PE=2 SV=1	2.0E-32	[1..213]	[1..213]
gi\|50540540, gi\|... - gi\|8099650\|gb\|AAF72188.1\| snRNP-associated protein; SmB [Danio rerio], gi\|50540540\|ref\|NP_991230.1\| ...	3.0E-32	[1..150]	[1..150]

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Predicted Domain #1

Region A:
Residues: [1-89]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTVGKSSKML QHIDYRMRCI LQDGRIFIGT FKAFDKHMNL ILCDCDEFRK IKPKNSKQAE  60
   61 REEKRVLGLV LLRGENLVSM TVEGPPPKD

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	26.39794
Match:	1d3bB
Description:	B core SNRNP protein
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
	9.36615441177233	bayes_pls_golite062009
RNA binding	5.81718051012035	bayes_pls_golite062009
nucleic acid binding	2.69031444148163	bayes_pls_golite062009
mRNA binding	2.57166143288861	bayes_pls_golite062009
binding	2.04681172391952	bayes_pls_golite062009

Predicted Domain #2

Region A:
Residues: [90-231]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 TGIARVPLAG AAGGPGIGRA AGRGIPAGVP MPQAPAGLAG PVRGVGGPSQ QVMTPQGRGT  60
   61 VAAAAAAATA SIAGAPTQYP PGRGGPPPPM GRGAPPPGMM GPPPGMRPPM GPPMGIPPGR 120
  121 GTPMGMPPPG MRPPPPGMRG LL

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	2.8
Match:	1wckA
Description:	Crystal structure of the C-terminal domain of BclA, the major antigen of the exosporium of the Bacillus anthracis spore.
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: