YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|110804600, gi...
Organism:	Shigella flexneri 5 str. 8401
Length:	268 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|110804600, gi....

Description	E-value	Query Range	Subject Range
gi\|7466109, gi\|1... - gi\|7466109\|pir\|\|B64794 hypothetical protein b0604 - Escherichia coli (strain K-12), gi\|1778522\|gb\|AA... gi\|4062221, gi\|1... - dbj\|BAA35234.1\| unnamed protein product [Escherichia coli K12], gb\|AAC73705.1\| thiol:disulfide inte... gi\|75514699 - gi\|75514699\|ref\|ZP_00736954.1\| COG1651: Protein-disulfide isomerase [Escherichia coli 53638] gi\|75236587 - gi\|75236587\|ref\|ZP_00720675.1\| COG1651: Protein-disulfide isomerase [Escherichia coli E110019]	238.0	[0..1]	[268..1]
gi\|13360101 - gi\|13360101\|dbj\|BAB34066.1\| thiol:disulfide interchange protein [Escherichia coli O157:H7 str. Sakai... gi\|13360101 - gi\|13360101\|dbj\|BAB34066.1\| thiol:disulfide interchange protein [Escherichia coli O157:H7] gi\|209777412, gi... - gi\|25500107\|pir\|\|G85559 thiol,disulfide interchange protein [imported] - Escherichia coli (strain O1... gi\|15800319, gi\|... - gi\|15800319\|ref\|NP_286331.1\| thiol:disulfide interchange protein [Escherichia coli O157:H7 EDL933], ...	238.0	[0..1]	[268..1]
gi\|117622826, gi... - gi\|117622826\|ref\|YP_851739.1\| disulfide isomerase/thiol-disulfide oxidase [Escherichia coli APEC O1]... gi\|26106983, gi\|... - gi\|26246584\|ref\|NP_752623.1\| Thiol:disulfide interchange protein dsbG precursor [Escherichia coli CF... gi\|91209652, gi\|... - gi\|91209652\|ref\|YP_539638.1\| thiol:disulfide interchange protein DsbG precursor [Escherichia coli UT... gi\|237707421, gi... - gi\|237707421\|ref\|ZP_04537902.1\| thiol:disulfide interchange protein dsbG [Escherichia sp. 3_2_53FAA]... gi\|227838500, gi... - gi\|227884414\|ref\|ZP_04002219.1\| disulfide isomerase/thiol-disulfide oxidase [Escherichia coli 83972]...	237.0	[0..1]	[268..1]
gi\|208823044, gi... - gi\|208823044\|ref\|ZP_03263362.1\| thiol:disulfide interchange protein DsbG [Escherichia coli O157:H7 s... gi\|189358031, gi... - gi\|189402026\|ref\|ZP_02779709.2\| thiol:disulfide interchange protein DsbG [Escherichia coli O157:H7 s... gi\|188024639, gi... - gi\|188024639\|ref\|ZP_02772750.2\| thiol:disulfide interchange protein DsbG [Escherichia coli O157:H7 s... gi\|38703881 - gi\|38703881\|ref\|NP_308670.2\| thiol:disulfide interchange protein [Escherichia coli O157:H7] gi\|38703881 - gi\|38703881\|ref\|NP_308670.2\| thiol:disulfide interchange protein [Escherichia coli O157:H7 str. Saka...	234.0	[0..3]	[268..1]
gi\|254591172, gi... - gi\|254791772\|ref\|YP_003076609.1\| periplasmic disulfide isomerase/thiol-disulphide oxidase [Escherich... gi\|217321536, gi... - gi\|217325315\|ref\|ZP_03441399.1\| thiol:disulfide interchange protein DsbG [Escherichia coli O157:H7 s... gi\|209160669, gi... - gi\|209399269\|ref\|YP_002269239.1\| thiol:disulfide interchange protein DsbG [Escherichia coli O157:H7 ... gi\|208816178, gi... - gi\|208816178\|ref\|ZP_03257357.1\| thiol:disulfide interchange protein DsbG [Escherichia coli O157:H7 s... gi\|208808801, gi... - gi\|208808801\|ref\|ZP_03251138.1\| thiol:disulfide interchange protein DsbG [Escherichia coli O157:H7 s... gi\|218698979, gi... - gi\|218698979\|ref\|YP_002406608.1\| disulfide isomerase/thiol-disulfide oxidase [Escherichia coli IAI39... gi\|168774664, gi... - gi\|187769699\|gb\|EDU33543.1\| thiol:disulfide interchange protein DsbG [Escherichia coli O157:H7 str. ... gi\|168770205, gi... - gi\|189360854\|gb\|EDU79273.1\| thiol:disulfide interchange protein DsbG [Escherichia coli O157:H7 str. ... gi\|189369165, gi... - gi\|189369165\|gb\|EDU87581.1\| thiol:disulfide interchange protein DsbG [Escherichia coli O157:H7 str. ... gi\|162139707 - gi\|162139707\|ref\|NP_308670.3\| disulfide isomerase/thiol-disulfide oxidase [Escherichia coli O157:H7 ... gi\|195936153 - gi\|195936153\|ref\|ZP_03081535.1\| disulfide isomerase/thiol-disulfide oxidase [Escherichia coli O157:H... gi\|189379398, gi... - gi\|189379398\|gb\|EDU97814.1\| thiol:disulfide interchange protein DsbG [Escherichia coli O157:H7 str. ... gi\|189373694, gi... - gi\|189373694\|gb\|EDU92110.1\| thiol:disulfide interchange protein DsbG [Escherichia coli O157:H7 str. ... gi\|189002875, gi... - gi\|189002875\|gb\|EDU71861.1\| thiol:disulfide interchange protein DsbG [Escherichia coli O157:H7 str. ... gi\|161367635 - gi\|161367635\|ref\|NP_286331.2\| disulfide isomerase/thiol-disulfide oxidase [Escherichia coli O157:H7 ... DSBG_ECO57 - Thiol:disulfide interchange protein DsbG OS=Escherichia coli O157:H7 GN=dsbG PE=3 SV=1	219.0	[0..36]	[268..16]
gi\|157160101, gi... - gi\|157160101\|ref\|YP_001457419.1\| disulfide isomerase/thiol-disulfide oxidase [Escherichia coli HS], ... gi\|85674721, gi\|... - gi\|89107472\|ref\|AP_001252.1\| periplasmic disulfide isomerase/thiol-disulphide oxidase [Escherichia c... EG13535 - thiol:disulfide interchange protein, periplasmic / Thiol:disulfide interchange protein, periplasmic;... gi\|192957667, gi... - gi\|193069123\|ref\|ZP_03050081.1\| thiol:disulfide interchange protein DsbG [Escherichia coli E110019],... gi\|188494455, gi... - gi\|188494455\|ref\|ZP_03001725.1\| thiol:disulfide interchange protein DsbG [Escherichia coli 53638], g... gi\|170080186, gi... - gi\|170080287\|ref\|YP_001729607.1\| periplasmic disulfide isomerase/thiol-disulphide oxidase [Escherich... gi\|169755964, gi... - gi\|170021036\|ref\|YP_001725990.1\| disulfide isomerase/thiol-disulfide oxidase [Escherichia coli ATCC ... gi\|218694046, gi... - gi\|218694046\|ref\|YP_002401713.1\| disulfide isomerase/thiol-disulfide oxidase [Escherichia coli 55989... gi\|218553148, gi... - gi\|218553148\|ref\|YP_002386061.1\| disulfide isomerase/thiol-disulfide oxidase [Escherichia coli IAI1]... EG13535 - thiol:disulfide interchange protein, periplasmic / Thiol:disulfide interchange protein, periplasmic;... gi\|194423648, gi... - gi\|194437479\|ref\|ZP_03069576.1\| thiol:disulfide interchange protein DsbG [Escherichia coli 101-1], g... gi\|124499358, gi... - gi\|124530195\|ref\|ZP_01700944.1\| periplasmic disulfide isomerase/thiol-disulphide oxidase [Escherichi... gi\|238899884, gi... - gi\|238899884\|ref\|YP_002925680.1\| periplasmic disulfide isomerase/thiol-disulphide oxidase [Escherich... DSBG_ECOLI - Thiol:disulfide interchange protein dsbG precursor - Escherichia coli	219.0	[0..36]	[268..16]
gi\|110342428, gi... - gi\|110640836\|ref\|YP_668564.1\| disulfide isomerase/thiol-disulfide oxidase [Escherichia coli 536], gi...	219.0	[0..36]	[268..16]
gi\|75258658, gi\|... - gi\|75258658\|ref\|ZP_00730065.1\| COG1651: Protein-disulfide isomerase [Escherichia coli E22], gi\|19306... gi\|75229510, gi\|... - gi\|75229510\|ref\|ZP_00716057.1\| COG1651: Protein-disulfide isomerase [Escherichia coli B7A], gi\|19116... gi\|75210767, gi\|... - gi\|75210767\|ref\|ZP_00710899.1\| COG1651: Protein-disulfide isomerase [Escherichia coli B171], gi\|1944...	218.0	[0..36]	[268..16]
gi\|73854616, gi\|... - gi\|74311139\|ref\|YP_309558.1\| disulfide isomerase/thiol-disulfide oxidase [Shigella sonnei Ss046], gi...	216.0	[0..36]	[266..16]
gi\|50513939, gi\|... - gi\|50513941\|pdb\|1V58\|B Chain B, Crystal Structure Of The Reduced Protein Disulfide Bond Isomerase Ds...	216.0	[0..38]	[268..1]

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Predicted Domain #1

Region A:
Residues: [1-268]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTVIGYAFYS TFALTEKNKL MLKKILLLAL LPAIAFAEEL PSPVKAIEKQ GITIIKTFDA  60
   61 PGGMKGYLGK YQDMGVTIYL TPDGKHAISG YMYNEKGENL SNTLIEKEIY APAGREMWQR 120
  121 MEQSHWLLDG KKDAPVIVYV FSDPFCPYCK QFWQQARPWV DSGKVQLRTL LVGVIKPESP 180
  181 ATAAAILASK DPAKTWQQYE ASGCKLKLNV PANVSTEQMK VLSDNEKLMD DLGANVTPAI 240
  241 YYMSKENTLQ QAVGLPDQKT LNIIMGNK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	56.30103
Match:	1v57A
Description:	Crystal Structure of the Disulfide Bond Isomerase DsbG
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
catalytic activity	0.142133664747919	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: