YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|110806646, gi...
Organism:	Shigella flexneri 5 str. 8401
Length:	290 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|110806646, gi....

Description	E-value	Query Range	Subject Range
gi\|25313849 - pir\|\|G85921 hypothetical protein hypB [imported] - Escherichia coli (strain O157:H7, substrain EDL9... gi\|12517179, gi\|... - gi\|15803245\|ref\|NP_289277.1\| hydrogenase nickel incorporation protein HypB [Escherichia coli O157:H7...	209.0	[0..1]	[290..1]
HYPB_ECOL6 - Hydrogenase isoenzymes nickel incorporation protein hypB OS=Escherichia coli O6 GN=hypB PE=3 SV=1 HYPB_ECOL6 - Hydrogenase isoenzymes nickel incorporation protein HypB OS=Escherichia coli O6:H1 (strain CFT073 / ... EG10484 - GTP hydrolase involved in nickel liganding into hydrogenases / Required for metallocenter assembly i... gi\|170682287, gi... - gi\|170682287\|ref\|YP_001744876.1\| hydrogenase isoenzymes nickel incorporation protein HypB [Escherich... gi\|209920166, gi... - gi\|209920166\|ref\|YP_002294250.1\| hydrogenase nickel incorporation protein HypB [Escherichia coli SE1... gi\|215266115, gi... - gi\|215488043\|ref\|YP_002330474.1\| hydrogenase nickel incorporation protein HypB [Escherichia coli O12... gi\|218362039, gi... - gi\|218555271\|ref\|YP_002388184.1\| hydrogenase nickel incorporation protein HypB [Escherichia coli IAI... gi\|218428415, gi... - gi\|218690851\|ref\|YP_002399063.1\| hydrogenase nickel incorporation protein HypB [Escherichia coli ED1... gi\|218701219, gi... - gi\|218701219\|ref\|YP_002408848.1\| hydrogenase nickel incorporation protein HypB [Escherichia coli IAI... EG10484 - GTP hydrolase involved in nickel liganding into hydrogenases / Required for metallocenter assembly i... gi\|110642850, gi... - gi\|110642850\|ref\|YP_670580.1\| hydrogenase nickel incorporation protein HypB [Escherichia coli 536], ... gi\|190908247, gi... - gi\|75241671\|ref\|ZP_00725508.1\| COG0378: Ni2+-binding GTPase involved in regulation of expression and... gi\|193065027, gi... - gi\|75256929\|ref\|ZP_00728505.1\| COG0378: Ni2+-binding GTPase involved in regulation of expression and... gi\|75230067, gi\|... - gi\|75230067\|ref\|ZP_00716577.1\| COG0378: Ni2+-binding GTPase involved in regulation of expression and... gi\|75235678, gi\|... - gi\|75235678\|ref\|ZP_00719852.1\| COG0378: Ni2+-binding GTPase involved in regulation of expression and... gi\|81246611, gi\|... - gi\|82545200\|ref\|YP_409147.1\| hydrogenase nickel incorporation protein HypB [Shigella boydii Sb227], ... gi\|254162658, gi... - gi\|254162658\|ref\|YP_003045766.1\| HypB [Escherichia coli B str. REL606], gi\|253974559\|gb\|ACT40230.1\| ... gi\|89109514, gi\|... - gi\|89109514\|ref\|AP_003294.1\| GTP hydrolase involved in nickel liganding into hydrogenases [Escherich... gi\|254037767, gi... - gi\|254037767\|ref\|ZP_04871825.1\| hydrogenase nickel incorporation protein HypB [Escherichia sp. 1_1_4... gi\|188489002, gi... - gi\|75512363\|ref\|ZP_00734915.1\| COG0378: Ni2+-binding GTPase involved in regulation of expression and... gi\|253323462, gi... - gi\|254289419\|ref\|YP_003055167.1\| GTP hydrolase involved in nickel liganding into hydrogenases [Esche... HYPB_ECOLI - Hydrogenase isoenzymes nickel incorporation protein hypB - Escherichia coli gi\|74313294, gi\|... - gi\|74313294\|ref\|YP_311713.1\| hydrogenase nickel incorporation protein HypB [Shigella sonnei Ss046], ... gi\|251786010, gi... - gi\|251786010\|ref\|YP_003000314.1\| hypothetical protein B21_02542 [Escherichia coli BL21], gi\|24237828... gi\|238861388, gi... - gi\|238901864\|ref\|YP_002927660.1\| GTP hydrolase involved in nickel liganding into hydrogenases [Esche... gi\|157067854, gi... - gi\|75196702\|ref\|ZP_00706772.1\| COG0378: Ni2+-binding GTPase involved in regulation of expression and... gi\|194414128, gi... - gi\|75210928\|ref\|ZP_00711052.1\| COG0378: Ni2+-binding GTPase involved in regulation of expression and... gi\|194422090, gi... - gi\|83585614\|ref\|ZP_00924257.1\| COG0378: Ni2+-binding GTPase involved in regulation of expression and... gi\|124528093, gi... - gi\|124528093\|ref\|ZP_01699446.1\| hydrogenase accessory protein HypB [Escherichia coli B], gi\|12450098... gi\|170019027, gi... - gi\|170019027\|ref\|YP_001723981.1\| hydrogenase nickel incorporation protein HypB [Escherichia coli ATC... gi\|187732261, gi... - gi\|75176412\|ref\|ZP_00696556.1\| COG0378: Ni2+-binding GTPase involved in regulation of expression and... gi\|170082303, gi... - gi\|170082303\|ref\|YP_001731623.1\| GTP hydrolase involved in nickel liganding into hydrogenases [Esche...	209.0	[0..1]	[290..1]
gi\|208808086, gi... - gi\|208808086\|ref\|ZP_03250423.1\| hydrogenase isoenzymes nickel incorporation protein HypB [Escherichi... gi\|208812172, gi... - gi\|208812172\|ref\|ZP_03253501.1\| hydrogenase isoenzymes nickel incorporation protein HypB [Escherichi... gi\|208818708, gi... - gi\|208818708\|ref\|ZP_03259028.1\| hydrogenase isoenzymes nickel incorporation protein HypB [Escherichi... gi\|209158440, gi... - gi\|209397040\|ref\|YP_002272191.1\| hydrogenase isoenzymes nickel incorporation protein HypB [Escherich... gi\|168778711, gi... - gi\|189003631\|gb\|EDU72617.1\| hydrogenase isoenzymes nickel incorporation protein HypB [Escherichia co... gi\|168787984, gi... - gi\|189372151\|gb\|EDU90567.1\| hydrogenase isoenzymes nickel incorporation protein HypB [Escherichia co... gi\|168800191, gi... - gi\|189377494\|gb\|EDU95910.1\| hydrogenase isoenzymes nickel incorporation protein HypB [Escherichia co... gi\|195938479 - gi\|195938479\|ref\|ZP_03083861.1\| hydrogenase nickel incorporation protein HypB [Escherichia coli O157... gi\|189357326, gi... - gi\|189357326\|gb\|EDU75745.1\| hydrogenase isoenzymes nickel incorporation protein HypB [Escherichia co... gi\|168762872, gi... - gi\|189366894\|gb\|EDU85310.1\| hydrogenase isoenzymes nickel incorporation protein HypB [Escherichia co... gi\|189362026, gi... - gi\|189362026\|gb\|EDU80445.1\| hydrogenase isoenzymes nickel incorporation protein HypB [Escherichia co... gi\|187769563, gi... - gi\|187769563\|gb\|EDU33407.1\| hydrogenase isoenzymes nickel incorporation protein HypB [Escherichia co... gi\|188015785, gi... - gi\|188015785\|gb\|EDU53907.1\| hydrogenase isoenzymes nickel incorporation protein HypB [Escherichia co... gi\|25313851, gi\|... - pir\|\|G91076 hydrogenase isoenzyme HypB [imported] - Escherichia coli (strain O157:H7, substrain RIM... gi\|15832837, gi\|... - gi\|15832837\|ref\|NP_311610.1\| HypB [Escherichia coli O157:H7], gi\|13363054\|dbj\|BAB37006.1\| hydrogenas... gi\|15832837, gi\|... - gi\|15832837\|ref\|NP_311610.1\| hydrogenase nickel incorporation protein HypB [Escherichia coli O157:H7... gi\|254794668, gi... - gi\|254794668\|ref\|YP_003079505.1\| GTP hydrolase involved in nickel liganding into hydrogenases [Esche... gi\|217327146, gi... - gi\|217327146\|ref\|ZP_03443229.1\| hydrogenase isoenzymes nickel incorporation protein HypB [Escherichi...	209.0	[0..1]	[290..1]
gi\|75187449, gi\|... - gi\|75187449\|ref\|ZP_00700716.1\| COG0378: Ni2+-binding GTPase involved in regulation of expression and...	208.0	[0..1]	[290..1]
gi\|41776 - gi\|41776\|emb\|CAA38413.1\| hydrogenase isoenzyme hypB [Escherichia coli]	207.0	[0..1]	[290..1]
gi\|83569908, gi\|... - gi\|83569908\|ref\|ZP_00921356.1\| COG0378: Ni2+-binding GTPase involved in regulation of expression and...	207.0	[0..1]	[290..1]
gi\|117624959, gi... - gi\|117624959\|ref\|YP_853947.1\| hydrogenase nickel incorporation protein HypB [Escherichia coli APEC O... gi\|218559717, gi... - gi\|218559717\|ref\|YP_002392630.1\| hydrogenase nickel incorporation protein HypB [Escherichia coli S88... gi\|91073661, gi\|... - gi\|91212087\|ref\|YP_542073.1\| hydrogenase nickel incorporation protein HypB [Escherichia coli UTI89],... gi\|226899689, gi... - gi\|237706649\|ref\|ZP_04537130.1\| hydrogenase nickel incorporation protein HypB [Escherichia sp. 3_2_5...	207.0	[0..1]	[290..1]
gi\|81242241, gi\|... - gi\|82778093\|ref\|YP_404442.1\| hydrogenase nickel incorporation protein HypB [Shigella dysenteriae Sd1...	207.0	[0..1]	[290..1]
gi\|50120173, gi\|... - gi\|50120173\|ref\|YP_049340.1\| hydrogenase nickel incorporation protein HypB [Pectobacterium atrosepti...	203.0	[0..1]	[287..1]
gi\|62128991, gi\|... - gi\|62181358\|ref\|YP_217775.1\| hydrogenase nickel incorporation protein HypB [Salmonella enterica subs...	201.0	[0..1]	[290..1]

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Predicted Domain #1

Region A:
Residues: [1-290]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MCTTCGCGEG NLYIEGDEHN PHSAFRSAPF APAARPQMKI TGIKAPEFTP SQTEEGDLHY  60
   61 GHGEAGTHTP GMSQRRMLEV EIDVLDKNNR LAERNRARFA ARKQLVLNLV SSPGSGKTTL 120
  121 LTETLMRLKD SVPCAVIEGD QQTVNDAARI RATGTPAIQV NTGKGCHLDA QMIADAAPRL 180
  181 PLDDNGILFI ENVGNLVCPA SFDLGEKHKV AVLSVTEGED KPLKYPHMFA AASLMLLNKV 240
  241 DLLPYLNFDV EKCIACAREV NPEIEIILIS ATSGEGMDQW LNWLETQRCA

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	32.30103
Match:	2hf8A
Description:	No description for 2hf8A was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits