YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|110807219, gi...
Organism:	Shigella flexneri 5 str. 8401
Length:	278 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|110807219, gi....

Description	E-value	Query Range	Subject Range
gi\|208812917, gi... - gi\|208812917\|ref\|ZP_03254246.1\| DNA adenine methylase [Escherichia coli O157:H7 str. EC4045], gi\|208... gi\|208820095, gi... - gi\|208820095\|ref\|ZP_03260415.1\| DNA adenine methylase [Escherichia coli O157:H7 str. EC4042], gi\|208... gi\|209396342, gi... - gi\|209396342\|ref\|YP_002272821.1\| DNA adenine methylase [Escherichia coli O157:H7 str. EC4115], gi\|20... gi\|209920839, gi... - gi\|209920839\|ref\|YP_002294923.1\| DNA adenine methylase [Escherichia coli SE11], gi\|209914098\|dbj\|BAG... EG10204 - DNA adenine methyltransferase / DNA-(adenine-N6)-methyltransferase, methylates GATC; role in repair ... gi\|217325932, gi... - gi\|217325932\|ref\|ZP_03442016.1\| DNA adenine methylase [Escherichia coli O157:H7 str. TW14588], gi\|21... gi\|218555932, gi... - gi\|218555932\|ref\|YP_002388845.1\| DNA adenine methylase [Escherichia coli IAI1], gi\|218362700\|emb\|CAR... DMA_ECO57 - DNA adenine methylase OS=Escherichia coli O157:H7 GN=dam PE=3 SV=1 gi\|218353799, gi... - gi\|218697067\|ref\|YP_002404734.1\| DNA adenine methylase [Escherichia coli 55989], gi\|218353799\|emb\|CA... EG10204 - DNA adenine methyltransferase / DNA-(adenine-N6)-methyltransferase, methylates GATC; role in repair ... gi\|12518007, gi\|... - gi\|15803890\|ref\|NP_289926.1\| DNA adenine methylase [Escherichia coli O157:H7 EDL933], gi\|12518007\|gb... gi\|75236988, gi\|... - gi\|75236988\|ref\|ZP_00721044.1\| COG0338: Site-specific DNA methylase [Escherichia coli E110019], gi\|1... gi\|187771540, gi... - gi\|187771540\|gb\|EDU35384.1\| DNA adenine methylase [Escherichia coli O157:H7 str. EC4196], gi\|1687727... gi\|193061744, gi... - gi\|75260324\|ref\|ZP_00731592.1\| COG0338: Site-specific DNA methylase [Escherichia coli E22], gi\|19306... gi\|189002487, gi... - gi\|189002487\|gb\|EDU71473.1\| DNA adenine methylase [Escherichia coli O157:H7 str. EC4076], gi\|1687794... gi\|75211753, gi\|... - gi\|75211753\|ref\|ZP_00711817.1\| COG0338: Site-specific DNA methylase [Escherichia coli B171], gi\|1944... gi\|168785188, gi... - gi\|189374291\|gb\|EDU92707.1\| DNA adenine methylase [Escherichia coli O157:H7 str. EC869], gi\|16878518... gi\|191167910, gi... - gi\|75228959\|ref\|ZP_00715551.1\| COG0338: Site-specific DNA methylase [Escherichia coli B7A], gi\|19116... gi\|189379959, gi... - gi\|189379959\|gb\|EDU98375.1\| DNA adenine methylase [Escherichia coli O157:H7 str. EC508], gi\|16879715... gi\|170018377, gi... - gi\|170018377\|ref\|YP_001723331.1\| DNA adenine methylase [Escherichia coli ATCC 8739], gi\|169753305\|gb... gi\|170082904, gi... - gi\|170082904\|ref\|YP_001732224.1\| DNA adenine methylase [Escherichia coli str. K-12 substr. DH10B], g... gi\|81247153, gi\|... - gi\|82545742\|ref\|YP_409689.1\| DNA adenine methylase [Shigella boydii Sb227], gi\|81247153\|gb\|ABB67861.... gi\|195934875 - gi\|195934875\|ref\|ZP_03080257.1\| DNA adenine methylase [Escherichia coli O157:H7 str. EC4024] gi\|89110623, gi\|... - gi\|89110623\|ref\|AP_004403.1\| DNA adenine methylase [Escherichia coli str. K-12 substr. W3110], gi\|85... gi\|208728770, gi... - gi\|208808969\|ref\|ZP_03251306.1\| DNA adenine methylase [Escherichia coli O157:H7 str. EC4206], gi\|208... gi\|75188161, gi\|... - gi\|75188161\|ref\|ZP_00701428.1\| COG0338: Site-specific DNA methylase [Escherichia coli E24377A], gi\|1... gi\|157162863, gi... - gi\|75197318\|ref\|ZP_00707388.1\| COG0338: Site-specific DNA methylase [Escherichia coli HS], gi\|157162... gi\|83585102, gi\|... - gi\|83585102\|ref\|ZP_00923754.1\| COG0338: Site-specific DNA methylase [Escherichia coli 101-1], gi\|194... gi\|187730578, gi... - gi\|75179995\|ref\|ZP_00699982.1\| COG0338: Site-specific DNA methylase [Shigella boydii BS512], gi\|1877... gi\|15833483, gi\|... - gi\|15833483\|ref\|NP_312256.1\| DNA adenine methylase [Escherichia coli O157:H7 str. Sakai], gi\|1336370... gi\|238860809, gi... - gi\|238902478\|ref\|YP_002928274.1\| DNA adenine methylase [Escherichia coli BW2952], gi\|238860809\|gb\|AC... gi\|251786640, gi... - gi\|251786640\|ref\|YP_003000944.1\| hypothetical protein B21_03191 [Escherichia coli BL21], gi\|24237891... gi\|253979372, gi... - gi\|254290065\|ref\|YP_003055813.1\| DNA adenine methylase [Escherichia coli BL21(DE3)], gi\|253979372\|gb... gi\|253975216, gi... - gi\|254163315\|ref\|YP_003046423.1\| DNA adenine methylase [Escherichia coli B str. REL606], gi\|25397521... gi\|254795301, gi... - gi\|254795301\|ref\|YP_003080138.1\| DNA adenine methylase [Escherichia coli O157:H7 str. TW14359], gi\|2... gi\|124528161, gi... - gi\|124528161\|ref\|ZP_01699494.1\| DNA adenine methylase [Escherichia coli B], gi\|124500816\|gb\|EAY48285... DMA_ECOLI - DNA adenine methylase (EC 2.1.1.72) (Deoxyadenosyl-methyltransferase) (DNA adenine methyltransferase... gi\|188014219, gi... - gi\|188014219\|gb\|EDU52341.1\| DNA adenine methylase [Escherichia coli O157:H7 str. EC4113], gi\|1687518... gi\|168753136, gi... - gi\|189359276\|gb\|EDU77695.1\| DNA adenine methylase [Escherichia coli O157:H7 str. EC4401], gi\|1687531... gi\|189369482, gi... - gi\|189369482\|gb\|EDU87898.1\| DNA adenine methylase [Escherichia coli O157:H7 str. EC4501], gi\|1687594... gi\|168765731, gi... - gi\|189364494\|gb\|EDU82913.1\| DNA adenine methylase [Escherichia coli O157:H7 str. EC4486], gi\|1687657...	356.0	[0..1]	[278..1]
gi\|227883517, gi... - gi\|227883517\|ref\|ZP_04001322.1\| site-specific DNA-methyltransferase (adenine-specific) [Escherichia ... gi\|237703114, gi... - gi\|237703114\|ref\|ZP_04533595.1\| DNA adenine methylase [Escherichia sp. 3_2_53FAA], gi\|226902378\|gb\|E... gi\|75516145, gi\|... - gi\|75516145\|ref\|ZP_00738263.1\| COG0338: Site-specific DNA methylase [Escherichia coli 53638], gi\|188... gi\|254038551, gi... - gi\|254038551\|ref\|ZP_04872607.1\| DNA adenine methylase [Escherichia sp. 1_1_43], gi\|226839057\|gb\|EEH7... gi\|75241523, gi\|... - gi\|75241523\|ref\|ZP_00725368.1\| COG0338: Site-specific DNA methylase [Escherichia coli F11], gi\|19117... gi\|26249981, gi\|... - gi\|26249981\|ref\|NP_756021.1\| DNA adenine methylase [Escherichia coli CFT073], gi\|26110410\|gb\|AAN8259... gi\|117625655, gi... - gi\|117625655\|ref\|YP_858978.1\| DNA adenine methylase [Escherichia coli APEC O1], gi\|115514779\|gb\|ABJ0... gi\|91212859, gi\|... - gi\|91212859\|ref\|YP_542845.1\| DNA adenine methylase [Escherichia coli UTI89], gi\|91074433\|gb\|ABE09314... gi\|110345213, gi... - gi\|110643621\|ref\|YP_671351.1\| DNA adenine methylase [Escherichia coli 536], gi\|110345213\|gb\|ABG71450... gi\|170683954, gi... - gi\|170683954\|ref\|YP_001745630.1\| DNA adenine methylase [Escherichia coli SMS-3-5], gi\|170521672\|gb\|A... gi\|218367213, gi... - gi\|218560444\|ref\|YP_002393357.1\| DNA adenine methylase [Escherichia coli S88], gi\|218367213\|emb\|CAR0... gi\|215266740, gi... - gi\|215488668\|ref\|YP_002331099.1\| DNA adenine methylase [Escherichia coli O127:H6 str. E2348/69], gi\|... gi\|218702130, gi... - gi\|218702130\|ref\|YP_002409759.1\| DNA adenine methylase [Escherichia coli IAI39], gi\|218372116\|emb\|CA... gi\|218691663, gi... - gi\|218691663\|ref\|YP_002399875.1\| DNA adenine methylase [Escherichia coli ED1a], gi\|218429227\|emb\|CAR...	355.0	[0..1]	[278..1]
gi\|73857369, gi\|... - gi\|74313892\|ref\|YP_312311.1\| DNA adenine methylase [Shigella sonnei Ss046], gi\|73857369\|gb\|AAZ90076.... gi\|194434647, gi... - gi\|194434647\|ref\|ZP_03066902.1\| DNA adenine methylase [Shigella dysenteriae 1012], gi\|194417106\|gb\|E...	354.0	[0..1]	[278..1]
gi\|82778798, gi\|... - gi\|82778798\|ref\|YP_405147.1\| DNA adenine methylase [Shigella dysenteriae Sd197], gi\|81242946\|gb\|ABB6...	354.0	[0..1]	[278..1]
gi\|168241621, gi... - gi\|205338780\|gb\|EDZ25544.1\| DNA adenine methylase [Salmonella enterica subsp. enterica serovar Heide... gi\|168260799, gi... - gi\|205350185\|gb\|EDZ36816.1\| DNA adenine methylase [Salmonella enterica subsp. enterica serovar Hadar... gi\|195632094, gi... - gi\|195632094\|gb\|EDX50578.1\| DNA adenine methylase [Salmonella enterica subsp. enterica serovar Newpo... gi\|205344648, gi... - gi\|205344648\|gb\|EDZ31412.1\| DNA adenine methylase [Salmonella enterica subsp. enterica serovar Welte... gi\|167549316, gi... - gi\|205325792\|gb\|EDZ13631.1\| DNA adenine methylase [Salmonella enterica subsp. enterica serovar Saint... gi\|167994589, gi... - gi\|205327583\|gb\|EDZ14347.1\| DNA adenine methylase [Salmonella enterica subsp. enterica serovar 4,[5]... gi\|205333151, gi... - gi\|205333151\|gb\|EDZ19915.1\| DNA adenine methylase [Salmonella enterica subsp. enterica serovar Kentu... gi\|168235074, gi... - gi\|197291528\|gb\|EDY30880.1\| DNA adenine methylase [Salmonella enterica subsp. enterica serovar Schwa... gi\|161365884, gi... - gi\|161616520\|ref\|YP_001590485.1\| DNA adenine methylase [Salmonella enterica subsp. enterica serovar ... gi\|213417852 - gi\|213417852\|ref\|ZP_03350954.1\| DNA adenine methylase [Salmonella enterica subsp. enterica serovar T... gi\|213426746 - gi\|213426746\|ref\|ZP_03359496.1\| DNA adenine methylase [Salmonella enterica subsp. enterica serovar T... gi\|213648703 - gi\|213648703\|ref\|ZP_03378756.1\| DNA adenine methylase [Salmonella enterica subsp. enterica serovar T... gi\|214000220 - gi\|214000220\|ref\|ZP_03410955.1\| DNA adenine methylase [Salmonella enterica subsp. enterica serovar T... gi\|238913607 - gi\|238913607\|ref\|ZP_04657444.1\| DNA adenine methylase [Salmonella enterica subsp. enterica serovar T... gi\|204928559, gi... - gi\|204928559\|ref\|ZP_03219758.1\| DNA adenine methylase [Salmonella enterica subsp. enterica serovar J... gi\|205354892, gi... - gi\|205354892\|ref\|YP_002228693.1\| DNA adenine methylase [Salmonella enterica subsp. enterica serovar ... gi\|206710527, gi... - gi\|207858724\|ref\|YP_002245375.1\| DNA adenine methylase [Salmonella enterica subsp. enterica serovar ... gi\|213053387 - gi\|213053387\|ref\|ZP_03346265.1\| DNA adenine methylase [Salmonella enterica subsp. enterica serovar T... gi\|197248723, gi... - gi\|197248723\|ref\|YP_002148405.1\| DNA adenine methylase [Salmonella enterica subsp. enterica serovar ... gi\|197264780, gi... - gi\|197264780\|ref\|ZP_03164854.1\| DNA adenine methylase [Salmonella enterica subsp. enterica serovar S... gi\|197937559, gi... - gi\|198243043\|ref\|YP_002217445.1\| DNA adenine methylase [Salmonella enterica subsp. enterica serovar ... gi\|200387646, gi... - gi\|200387646\|ref\|ZP_03214258.1\| DNA adenine methylase [Salmonella enterica subsp. enterica serovar V... gi\|194442408, gi... - gi\|194442408\|ref\|YP_002042734.1\| DNA adenine methylase [Salmonella enterica subsp. enterica serovar ... gi\|194448269, gi... - gi\|194448269\|ref\|YP_002047508.1\| DNA adenine methylase [Salmonella enterica subsp. enterica serovar ... gi\|194455380, gi... - gi\|194469016\|ref\|ZP_03075000.1\| DNA adenine methylase [Salmonella enterica subsp. enterica serovar K... gi\|194710366, gi... - gi\|194734864\|ref\|YP_002116427.1\| DNA adenine methylase [Salmonella enterica subsp. enterica serovar ... DMA_SALTY - DNA adenine methylase OS=Salmonella typhimurium (strain LT2 / SGSC1412 / ATCC 700720) GN=dam PE=3 SV... gi\|62129619, gi\|... - gi\|62181986\|ref\|YP_218403.1\| DNA adenine methylase [Salmonella enterica subsp. enterica serovar Chol... gi\|29144290, gi\|... - gi\|29144290\|ref\|NP_807632.1\| DNA adenine methylase [Salmonella enterica subsp. enterica serovar Typh... DMA_SALTI - DNA adenine methylase OS=Salmonella typhi GN=dam PE=3 SV=1 DMA_SALTI - DNA adenine methylase OS=Salmonella typhi GN=dam PE=3 SV=1 gi\|16762803 - gi\|16762803\|ref\|NP_458420.1\| DNA adenine methylase [Salmonella enterica subsp. enterica serovar Typh... DMA_SALTY - DNA adenine methylase OS=Salmonella typhimurium GN=dam PE=3 SV=1 gi\|224469806, gi... - gi\|224585278\|ref\|YP_002639077.1\| DNA adenine methylase [Salmonella enterica subsp. enterica serovar ... DMA_SALTY - DNA adenine methylase OS=Salmonella typhimurium GN=dam PE=3 SV=1 lcl\|NC_016856.1_... - [gene=dam] [protein=DNA adenine methylase] [protein_id=YP_005239682.1] [location=complement(3652585....	352.0	[0..1]	[278..1]
gi\|56415400, gi\|... - gi\|56415400\|ref\|YP_152475.1\| DNA adenine methylase [Salmonella enterica subsp. enterica serovar Para... gi\|197364330, gi... - gi\|197364330\|ref\|YP_002143967.1\| DNA adenine methylase [Salmonella enterica subsp. enterica serovar ...	351.0	[0..1]	[278..1]
gi\|1675388 - gi\|1675388\|gb\|AAB19116.1\| adenine methylase [Salmonella typhimurium] DMA_SALTM - DNA adenine methylase OS=Salmonella typhimurium GN=dam PE=1 SV=1	348.0	[0..1]	[278..1]
gi\|54307504, gi\|... - gi\|54307504\|ref\|YP_128524.1\| putative DNA adenine methylase [Photobacterium profundum SS9], gi\|46911...	339.0	[0..1]	[275..1]
gi\|90413591, gi\|... - gi\|90413591\|ref\|ZP_01221581.1\| putative DNA adenine methylase [Photobacterium profundum 3TCK], gi\|90...	337.0	[0..1]	[275..1]
DMA_VIBCH - DNA adenine methylase OS=Vibrio cholerae GN=dam PE=3 SV=1 gi\|229507322, gi... - gi\|229507322\|ref\|ZP_04396827.1\| methyl-directed repair DNA adenine methylase [Vibrio cholerae BX 330... gi\|254285820, gi... - gi\|254285820\|ref\|ZP_04960782.1\| DNA adenine methylase [Vibrio cholerae AM-19226], gi\|197752577\|ref\|Y... gi\|229513549, gi... - gi\|229513549\|ref\|ZP_04403013.1\| methyl-directed repair DNA adenine methylase [Vibrio cholerae TMA 21... gi\|148874463, gi... - gi\|153830064\|ref\|ZP_01982731.1\| DNA adenine methylase [Vibrio cholerae 623-39], gi\|148874463\|gb\|EDL7... gi\|229345942, gi... - gi\|229516879\|ref\|ZP_04406325.1\| methyl-directed repair DNA adenine methylase [Vibrio cholerae RC9], ... gi\|229335077, gi... - gi\|229527445\|ref\|ZP_04416837.1\| methyl-directed repair DNA adenine methylase [Vibrio cholerae 12129(... gi\|229369483, gi... - gi\|229606828\|ref\|YP_002877476.1\| methyl-directed repair DNA adenine methylase [Vibrio cholerae MJ-12... DMA_VIBCH - DNA adenine methylase OS=Vibrio cholerae serotype O1 (strain ATCC 39315 / El Tor Inaba N16961) GN=da... gi\|121588094, gi... - gi\|121588094\|ref\|ZP_01677842.1\| DNA adenine methylase [Vibrio cholerae 2740-80], gi\|121547637\|gb\|EAX... gi\|153214884, gi... - gi\|153214884\|ref\|ZP_01949682.1\| DNA adenine methylase [Vibrio cholerae 1587], gi\|124115043\|gb\|EAY338... gi\|126510410, gi... - gi\|153819029\|ref\|ZP_01971696.1\| DNA adenine methylase [Vibrio cholerae NCTC 8457], gi\|126510410\|gb\|E... gi\|254846870, gi... - gi\|75829421\|ref\|ZP_00758724.1\| COG0338: Site-specific DNA methylase [Vibrio cholerae MO10], gi\|25485... gi\|229509754, gi... - gi\|229509754\|ref\|ZP_04399235.1\| methyl-directed repair DNA adenine methylase [Vibrio cholerae B33], ... DMA_VIBC3 - DNA adenine methylase OS=Vibrio cholerae serotype O1 (strain ATCC 39541 / Classical Ogawa 395 / O395... gi\|75824043, gi\|... - gi\|75824043\|ref\|ZP_00753512.1\| COG0338: Site-specific DNA methylase [Vibrio cholerae RC385], gi\|2542... gi\|75815111, gi\|... - gi\|75815111\|ref\|ZP_00745637.1\| COG0338: Site-specific DNA methylase [Vibrio cholerae V52], gi\|121729...	332.0	[0..1]	[276..1]

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Predicted Domain #1

Region A:
Residues: [1-278]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKKNRAFLKW AGGKYPLLDD IKRHLPKGEC LVEPFVGAGS VFLNTDFSRY ILADINSDLI  60
   61 SLYNIVKMRT DEYVQAAREL FVPETNCAEV YYQFREEFNK SQDPFRRAVL FLYLNRYGYN 120
  121 GLCRYNLRGE FNVPFGRYKK PYFPEAELYH FAEKAQNAFF YCESYADSME RADDASVVYC 180
  181 DPPYAPLSAT ANFTAYHTNS FTLEQQAHLA EIAEGLVERH IPVLISNHDT MLTREWYQRA 240
  241 KLHVVKVRRS ISSNGGTRKK VDELLALYKP GVVSPAKK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	100.0
Match:	2oreD
Description:	No description for 2oreD was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits