YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|89107913, gi\|...
Organism:	Escherichia coli str. K-12 substr. W3110
Length:	215 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|89107913, gi|....

Description	E-value	Query Range	Subject Range
gi\|124498763, gi... - gi\|124531144\|ref\|ZP_01701499.1\| protein of unknown function DUF480 [Escherichia coli B], gi\|12449876... YCEH_ECO55 - UPF0502 protein YceH OS=Escherichia coli (strain 55989 / EAEC) GN=yceH PE=3 SV=1 YCEH_ECOSE - UPF0502 protein YceH OS=Escherichia coli (strain SE11) GN=yceH PE=3 SV=1 YCEH_ECO8A - UPF0502 protein YceH OS=Escherichia coli O8 (strain IAI1) GN=yceH PE=3 SV=1 gi\|192957186, gi... - gi\|75235929\|ref\|ZP_00720066.1\| COG3132: Uncharacterized protein conserved in bacteria [Escherichia c... gi\|75228335, gi\|... - gi\|75228335\|ref\|ZP_00714985.1\| COG3132: Uncharacterized protein conserved in bacteria [Escherichia c... YCEH_ECOHS - UPF0502 protein YceH OS=Escherichia coli O9:H4 (strain HS) GN=yceH PE=3 SV=1 YCEH_ECO24 - UPF0502 protein YceH OS=Escherichia coli O139:H28 (strain E24377A / ETEC) GN=yceH PE=3 SV=1 YCEH_SHISS - UPF0502 protein YceH OS=Shigella sonnei (strain Ss046) GN=yceH PE=3 SV=1 YCEH_ECOLC - UPF0502 protein YceH OS=Escherichia coli (strain ATCC 8739 / DSM 1576 / Crooks) GN=yceH PE=3 SV=1	353.0	[0..1]	[215..1]
YCEH_ECOL6 - UPF0502 protein YceH OS=Escherichia coli O6:H1 (strain CFT073 / ATCC 700928 / UPEC) GN=yceH PE=3 SV=... YCEH_ECOK1 - UPF0502 protein YceH OS=Escherichia coli O1:K1 / APEC GN=yceH PE=3 SV=1 YCEH_ECOUT - UPF0502 protein YceH OS=Escherichia coli (strain UTI89 / UPEC) GN=yceH PE=3 SV=1 gi\|227836779, gi... - gi\|227886575\|ref\|ZP_04004380.1\| protein of hypothetical function DUF480 [Escherichia coli 83972], gi... YCEH_ECOLU - UPF0502 protein YceH OS=Escherichia coli O17:K52:H18 (strain UMN026 / ExPEC) GN=yceH PE=3 SV=1 YCEH_ECOSM - UPF0502 protein YceH OS=Escherichia coli (strain SMS-3-5 / SECEC) GN=yceH PE=3 SV=1 YCEH_ECO45 - UPF0502 protein YceH OS=Escherichia coli O45:K1 (strain S88 / ExPEC) GN=yceH PE=3 SV=1 YCEH_ECOL6 - UPF0502 protein yceH OS=Escherichia coli O6 GN=yceH PE=3 SV=1	352.0	[0..1]	[215..1]
YCEH_SHIB3 - UPF0502 protein YceH OS=Shigella boydii serotype 18 (strain CDC 3083-94 / BS512) GN=yceH PE=3 SV=1	352.0	[0..1]	[215..1]
gi\|191172393, gi... - gi\|191172393\|ref\|ZP_03033934.1\| conserved hypothetical protein [Escherichia coli F11], gi\|190907277\|... YCEH_ECO27 - UPF0502 protein YceH OS=Escherichia coli O127:H6 (strain E2348/69 / EPEC) GN=yceH PE=3 SV=1 YCEH_ECOL5 - UPF0502 protein YceH OS=Escherichia coli O6:K15:H31 (strain 536 / UPEC) GN=yceH PE=3 SV=1 sp\|B7UP81\|YCEH_ECO27 - UPF0502 protein yceH OS=Escherichia coli O127:H6 (strain E2348/69 / EPEC) GN=yceH PE=3 SV=1	351.0	[0..1]	[215..1]
gi\|194438058, gi... - gi\|83586399\|ref\|ZP_00925033.1\| COG3132: Uncharacterized protein conserved in bacteria [Escherichia c...	351.0	[0..1]	[215..1]
gi\|168783597, gi... - gi\|188999066\|gb\|EDU68052.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4076], g... gi\|187770517, gi... - gi\|187770517\|gb\|EDU34361.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4196], g... gi\|168767726, gi... - gi\|189363177\|gb\|EDU81596.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4486], g... gi\|168764479, gi... - gi\|189365524\|gb\|EDU83940.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4501], g... gi\|208728026, gi... - gi\|208808225\|ref\|ZP_03250562.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4206... gi\|195935456 - gi\|195935456\|ref\|ZP_03080838.1\| hypothetical protein EscherichcoliO157_03197 [Escherichia coli O157:... gi\|189375932, gi... - gi\|189375932\|gb\|EDU94348.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC508], gi... gi\|189370500, gi... - gi\|189370500\|gb\|EDU88916.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC869], gi... gi\|189354580, gi... - gi\|189354580\|gb\|EDU72999.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4401], g... gi\|188018114, gi... - gi\|188018114\|gb\|EDU56236.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4113], g... YCEH_ECO57 - UPF0502 protein YceH OS=Escherichia coli O157:H7 GN=yceH PE=3 SV=1 gi\|209773460, gi... - pir\|\|A85669 hypothetical protein yceH [imported] - Escherichia coli (strain O157:H7, substrain EDL9... gi\|15801184, gi\|... - gi\|15801184\|ref\|NP_287201.1\| hypothetical protein Z1704 [Escherichia coli O157:H7 EDL933], gi\|125146... gi\|13360909, gi\|... - gi\|15830699\|ref\|NP_309472.1\| hypothetical protein ECs1445 [Escherichia coli O157:H7 str. Sakai], gi\|... gi\|254591849, gi... - gi\|254792449\|ref\|YP_003077286.1\| hypothetical protein ECSP_1368 [Escherichia coli O157:H7 str. TW143... gi\|217328113, gi... - gi\|217328113\|ref\|ZP_03444195.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. TW1458... YCEH_ECO5E - UPF0502 protein YceH OS=Escherichia coli O157:H7 (strain EC4115 / EHEC) GN=yceH PE=3 SV=1 gi\|208737687, gi... - gi\|208822202\|ref\|ZP_03262521.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4042... gi\|208815558, gi... - gi\|208815558\|ref\|ZP_03256737.1\| conserved hypothetical protein [Escherichia coli O157:H7 str. EC4045...	351.0	[0..1]	[215..1]
YCEH_SHIBS - UPF0502 protein YceH OS=Shigella boydii serotype 4 (strain Sb227) GN=yceH PE=3 SV=1	351.0	[0..1]	[215..1]
gi\|188491150, gi... - gi\|75513511\|ref\|ZP_00735915.1\| COG3132: Uncharacterized protein conserved in bacteria [Escherichia c...	351.0	[0..1]	[215..1]
gi\|24112478, gi\|... - gi\|24112478\|ref\|NP_706988.1\| hypothetical protein SF1073 [Shigella flexneri 2a str. 301], gi\|2405136... YCEH_SHIFL - UPF0502 protein YceH OS=Shigella flexneri GN=yceH PE=3 SV=1 YCEH_SHIF8 - UPF0502 protein YceH OS=Shigella flexneri serotype 5b (strain 8401) GN=yceH PE=3 SV=1 gi\|30040851, gi\|... - gi\|30062605\|ref\|NP_836776.1\| hypothetical protein S1151 [Shigella flexneri 2a str. 2457T], gi\|300408...	350.0	[0..1]	[215..1]
gi\|194419340, gi... - gi\|83570486\|ref\|ZP_00921930.1\| COG3132: Uncharacterized protein conserved in bacteria [Shigella dyse...	348.0	[0..1]	[215..1]

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Predicted Domain #1

Region A:
Residues: [1-215]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKYQLTALEA RVIGCLLEKQ VTTPEQYPLS VNGVVTACNQ KTNREPVMNL SESEVQEQLD  60
   61 NLVKRHYLRT VSGFGNRVTK YEQRFCNSEF GDLKLSAAEV ALITTLLLRG AQTPGELRSR 120
  121 AARMYEFSDM AEVESTLEQL ANREDGPFVV RLAREPGKRE NRYMHLFSGE VEDQPAVTDM 180
  181 SNAVDGDLQA RVEALEIEVA ELKQRLDSLL AHLGD

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	61.39794
Match:	2nr3A
Description:	No description for 2nr3A was found.

Predicted functions:

Term	Confidence	Notes
binding	1.24887675891573	bayes_pls_golite062009
nucleic acid binding	0.727767281059745	bayes_pls_golite062009
transcription regulator activity	0.667541490112564	bayes_pls_golite062009
DNA binding	0.635005588507232	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: