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View Structure Prediction Details

Protein: gi|109094045, gi...
Organism: Macaca mulatta
Length: 548 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|109094045, gi....

Description E-value Query
Range
Subject
Range
EIF3D_RAT - Eukaryotic translation initiation factor 3 subunit D OS=Rattus norvegicus GN=Eif3d PE=1 SV=1
EIF3D_MOUSE - Eukaryotic translation initiation factor 3 subunit D OS=Mus musculus GN=Eif3d PE=1 SV=2
0.0 [1..529] [1..529]
EIF3D_BOVIN - Eukaryotic translation initiation factor 3 subunit D OS=Bos taurus GN=EIF3D PE=2 SV=1
0.0 [1..529] [1..529]
gi|114686220 - gi|114686220|ref|XP_001158987.1| PREDICTED: eukaryotic translation initiation factor 3 subunit 7 iso...
0.0 [1..529] [1..529]
gi|73969188 - gi|73969188|ref|XP_850595.1| PREDICTED: similar to eukaryotic translation initiation factor 3 subuni...
0.0 [1..529] [1..529]
gi|119580514 - gi|119580514|gb|EAW60110.1| eukaryotic translation initiation factor 3, subunit 7 zeta, 66/67kDa, is...
gi|109094049 - gi|109094049|ref|XP_001083790.1| PREDICTED: similar to eukaryotic translation initiation factor 3 su...
0.0 [1..529] [1..529]
gi|26337171 - gi|26337171|dbj|BAC32270.1| unnamed protein product [Mus musculus]
0.0 [1..529] [1..529]
IF37_PONPY - Eukaryotic translation initiation factor 3 subunit 7 - Pongo pygmaeus (Orangutan)
EIF3D_PONAB - Eukaryotic translation initiation factor 3 subunit D OS=Pongo abelii GN=EIF3D PE=2 SV=1
0.0 [1..529] [1..529]
EIF3D_MACFA - Eukaryotic translation initiation factor 3 subunit D OS=Macaca fascicularis GN=EIF3D PE=2 SV=1
0.0 [1..529] [1..529]

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Predicted Domain #1
Region A:
Residues: [1-150]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAKFMTPVIQ DNPSGWGPCA VPEQFRDMPY QPFSKGDRLG KVADWTGATY QDKRYTNKYS  60
   61 SQFGGGSQYA YFHEEDESSF QLVDTARTQK TAYQRNRMRF AQRNLRRDKD RRNMLQFNLQ 120
  121 ILPKSAKQKE RERIRLQKKF QKQFGVRQKW 

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

    MCM
Score
SCOP
Match
SCOP Description
View Download 0.379 b.43.5 Riboflavin kinase
View Download 0.301 d.14.1 Ribosomal protein S5 domain 2-like
View Download 0.275 a.45.1 Glutathione S-transferase (GST), C-terminal domain
View Download 0.232 c.31.1 DHS-like NAD/FAD-binding domain

Predicted Domain #2
Region A:
Residues: [151-292]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 DQKSQKPRDS SVEVRSDWEV KEEMDFPQLM KMRYLEVSEP QDIECCGALE YYDKAFDRIT  60
   61 TRSEKPLRSI KRIFHTVTTT DDPVIRKLAK TQGNVFATDA ILATLMSCTR SVYSWDIVVQ 120
  121 RVGSKLFFDK RDNSDFDLLT VS

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

    MCM
Score
SCOP
Match
SCOP Description
View Download 0.545 c.23.5 Flavoproteins
View Download 0.426 a.63.1 Apolipophorin-III
View Download 0.363 c.95.1 Thiolase-like
View Download 0.355 b.60.1 Lipocalins
View Download 0.335 c.95.1 Thiolase-like

Predicted Domain #3
Region A:
Residues: [293-548]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 ETANEPPQDE GNSFNSPRNL AMEATYINHN FSQQCLRMGK ERYNFPNPNP FVEDDMDKNE  60
   61 IASVAYRYRR WKLGDDIDLI VRCEHDGVMT GANGEVSFIN IKTLNEWDSR HCNGVDWRQK 120
  121 LDSQRGAVIA TELKNNSYKL ARWTCCALLA GSEYLKLGYV SRYHVKDSSR HVILGTQQFK 180
  181 PNEFASQINL SVENAWGILR CVIDICMKLE EGKYLILKDP NKQVIRVYSL PDGTFSSDED 240
  241 EEEEEEEEEE EEEEET

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle