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View Structure Prediction Details

Protein: gi|109018974
Organism: Macaca mulatta
Length: 388 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|109018974.

Description E-value Query
Range
Subject
Range
LHX9_MOUSE - LIM/homeobox protein Lhx9 OS=Mus musculus GN=Lhx9 PE=2 SV=2
6.0E-55 [1..388] [1..388]
LHX9_RAT - LIM/homeobox protein Lhx9 OS=Rattus norvegicus GN=Lhx9 PE=2 SV=1
8.0E-55 [1..388] [1..388]
LHX9 - LIM homeobox 9
gi|114571654 - gi|114571654|ref|XP_001139482.1| PREDICTED: similar to LIM homeobox 9 isoform 5 [Pan troglodytes]
gi|73960328 - gi|73960328|ref|XP_848787.1| PREDICTED: similar to LIM homeobox 9 isoform 1 isoform 2 [Canis familia...
gi|109018976 - gi|109018976|ref|XP_001110674.1| PREDICTED: LIM homeobox 9 isoform 3 [Macaca mulatta]
3.0E-51 [8..388] [17..397]
gi|66792874, gi|... - gi|66792874|ref|NP_001019715.1| LIM homeobox 9 [Bos taurus], gi|61555226|gb|AAX46681.1| LIM homeobox...
3.0E-51 [11..388] [1..378]
gi|109018978 - gi|109018978|ref|XP_001110753.1| PREDICTED: LIM homeobox 9 isoform 4 [Macaca mulatta]
7.0E-50 [6..388] [10..394]
gi|114571656 - gi|114571656|ref|XP_001139158.1| PREDICTED: similar to LIM homeobox 9 isoform 2 [Pan troglodytes]
9.0E-50 [8..388] [17..399]
gi|556038, gi|74... - pir||JC5658 LIM domain-containing homeodomain LH-2B - chicken, gi|556038|gb|AAA50258.1| homeobox pr...
2.0E-49 [11..388] [1..378]

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Predicted Domain #1
Region A:
Residues: [1-239]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLNGTTLEAA MLFHGISGGH IQGIMEEMER RSKTEARLAK GAQLNGRDAG MPPLSPEKPA  60
   61 LCAGCGGKIS DRYYLLAVDK QWHLRCLKCC ECKLALESEL TCFAKDGSIY CKEDYYRRFS 120
  121 VQRCARCHLG ISASEMVMRA RDSVYHLSCF TCSTCNKTLT TGDHFGMKDS LVYCRAHFET 180
  181 LLQGEYPPQL SYTELAAKSG GLALPYFNGT GTVQKGRPRK RKSPALGVDI VNYNSGCNE

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 11.522879
Match: 2dfyX
Description: No description for 2dfyX was found.

Predicted Domain #2
Region A:
Residues: [240-326]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NEADHLDRDQ QPYPPSQKTK RMRTSFKHHQ LRTMKSYFAI NHNPDAKDLK QLAQKTGLTK  60
   61 RVLQVWFQNA RAKFRRNLLR QENGGVD

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 13.0
Match: 2dmqA
Description: No description for 2dmqA was found.

Predicted Domain #3
Region A:
Residues: [327-388]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 KADGTSLPAP PSADSGALTP PGTATTLTDL TNPTITVVTS VTSNMDSHES GSPSQTTLTN  60
   61 LF

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle