YRC Public Data Repository - Protein Structure Prediction

Protein:	SLBP_MOUSE
Organism:	Mus musculus
Length:	275 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for SLBP_MOUSE.

Description	E-value	Query Range	Subject Range
gi\|74187587 - gi\|74187587\|dbj\|BAE36737.1\| unnamed protein product [Mus musculus]	414.0	[0..1]	[275..1]
gi\|189442753, gi... - gi\|195976798\|ref\|NP_001124460.1\| stem-loop binding protein [Rattus norvegicus], gi\|189442753\|gb\|AAI6...	408.0	[0..1]	[275..1]
SLBP - stem-loop binding protein gi\|61360999, gi\|... - gi\|61360999\|gb\|AAX41969.1\| stem-loop binding protein [synthetic construct], gi\|61360993\|gb\|AAX41968....	388.0	[0..1]	[275..1]
gi\|73951400 - gi\|73951400\|ref\|XP_545928.2\| PREDICTED: similar to stem-loop binding protein isoform 4 [Canis famili...	383.0	[0..1]	[275..1]
gi\|114592841 - gi\|114592841\|ref\|XP_001144566.1\| PREDICTED: histone stem-loop binding protein isoform 3 [Pan troglod...	381.0	[0..1]	[275..1]
gi\|114053069, gi... - gi\|82571711\|gb\|AAI10147.1\| Histone stem loop binding protein [Bos taurus], gi\|114053069\|ref\|NP_00103...	357.0	[0..1]	[271..1]

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Predicted Domain #1

Region A:
Residues: [1-121]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MACRPRSPPG YGSRRDGGAS PRSPARWSLG RKRRADGRDR KPEDSEEGEL QTADHRPESF  60
   61 TTPEGHKPRS RCSDWASAVE EDEMRTRVNK EIARYKRKLL INDFGRERKS SSGSSDSKES 120
  121 M

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [122-275]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SSVPADVETD ESVLMRRQKQ INYGKNTIAY DRYIKEVPRH LRQPGIHPRT PNKFKKYSRR  60
   61 SWDQQIKLWK VALHFWDPPA EEGCDLQEIQ PVDLGEMETE FTESSSESQT SSQDNFDVYA 120
  121 GTPTKVRHVD CQVEDEFDLE ACLTEPLKDF SAMS

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits