YRC Public Data Repository - Protein Structure Prediction

Protein:	DSCR3_MOUSE
Organism:	Mus musculus
Length:	297 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for DSCR3_MOUSE.

Description	E-value	Query Range	Subject Range
gi\|149017705, gi... - gi\|149017705\|gb\|EDL76706.1\| Down syndrome critical region gene 3 (predicted), isoform CRA_c [Rattus ...	280.0	[0..1]	[297..1]
gi\|109065351 - gi\|109065351\|ref\|XP_001083723.1\| PREDICTED: Down syndrome critical region protein 3 [Macaca mulatta]	274.0	[0..1]	[296..1]
gi\|61366872, gi\|... - gi\|61366872\|gb\|AAX42919.1\| Down syndrome critical region gene 3 [synthetic construct], gi\|54695590\|g...	273.0	[0..1]	[296..1]
DSCR3 - Down syndrome critical region gene 3	273.0	[0..1]	[296..1]
gi\|114684104 - gi\|114684104\|ref\|XP_531457.2\| PREDICTED: Down syndrome critical region protein 3 isoform 6 [Pan trog...	272.0	[0..1]	[296..1]
gi\|50729967 - gi\|50729967\|ref\|XP_416728.1\| PREDICTED: similar to DCRA [Gallus gallus]	271.0	[0..1]	[296..1]
DSCR3_PONPY - Down syndrome critical region protein 3 homolog - Pongo pygmaeus (Orangutan) DSCR3_PONAB - Down syndrome critical region protein 3 homolog OS=Pongo abelii GN=DSCR3 PE=2 SV=1	270.0	[0..1]	[296..1]
gi\|71051880, gi\|... - gi\|71051880\|gb\|AAH99318.1\| LOC431791 protein [Xenopus laevis], gi\|148228400\|ref\|NP_001084757.1\| hypo...	268.0	[0..1]	[296..1]

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Predicted Domain #1

Region A:
Residues: [1-297]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGTTLDIKIK RANKVYHAGE MLSGVVVISS KDSVQHQGVS LTMEGTVNLQ LSAKSVGVFE  60
   61 AFYNSVKPIQ IINSTIDVLK PGKIPSGKTE VPFEFPLLVK GSKVLYETYH GVFVNIQYTL 120
  121 RCDMRRSLLA KDLTKTCEFI VHSAPQKGKL TPSPVDFTIT PETLQNVKER ASLPKFFIRG 180
  181 HLNSTNCAIT QPLTGELVVE HSDAAIRSIE LQLVRVETCG CAEGYARDAT EIQNIQIADG 240
  241 DICRNLSVPL YMVFPRLFTC PTLETTNFKV EFEVNVVVLL HADHLITENF PLKLCRT

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	64.69897
Match:	2fauA
Description:	No description for 2fauA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits