YRC Public Data Repository - Protein Structure Prediction

Protein:	YFHI_SCHPO
Organism:	Schizosaccharomyces pombe 972h-
Length:	291 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YFHI_SCHPO.

Description	E-value	Query Range	Subject Range
gi\|28923415, gi\|... - gi\|32413643\|ref\|XP_327301.1\| hypothetical protein [Neurospora crassa], gi\|28923415\|gb\|EAA32600.1\| hy... gi\|85104933 - gi\|85104933\|ref\|XP_961836.1\| hypothetical protein [Neurospora crassa OR74A]	152.0	[0..10]	[131..598]
MRP51 - Mitochondrial ribosomal protein of the small subunit; MRP51 exhibits genetic interactions with mutat... RT51_YEAST - 37S ribosomal protein MRP51, mitochondrial OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) ...	148.0	[0..5]	[128..20]
gi\|145014846, gi... - gi\|39944202\|ref\|XP_361638.1\| hypothetical protein MGG_04112 [Magnaporthe grisea 70-15], gb\|EAA50353....	148.0	[0..10]	[131..39]
gi\|42552367, gi\|... - gi\|46122523\|ref\|XP_385815.1\| hypothetical protein FG05639.1 [Gibberella zeae PH-1], gi\|42552367\|gb\|E...	142.0	[0..4]	[131..22]
orf19.185 - orf19.185 CGDID:CAL0003248 Assembly 19, Contig19-10044 (5622, 6728) CDS, translated using codon tabl... gi\|68491154, gi\|... - gi\|68491154\|ref\|XP_710613.1\| possible mitochondrial ribosomal large subunit protein MRP51p [Candida ...	139.0	[0..5]	[118..22]
YHS3_LACK1 - Uncharacterized protein in HIS3 3'region (Fragment) OS=Lachancea kluyveri (strain ATCC 58438 / CBS 3... YHS3_SACKL, YHS3... - Uncharacterized protein in HIS3 3'region (Fragment) OS=Saccharomyces kluyveri PE=4 SV=1, Uncharacter...	132.0	[0..3]	[113..10]
gi\|37931732 - gi\|37931732\|gb\|AAP69230.1\| small subunit ribosomal protein [Torulaspora delbrueckii]	132.0	[0..17]	[113..29]
gi\|67539616, gi\|... - gi\|67539616\|ref\|XP_663582.1\| hypothetical protein AN5978.2 [Aspergillus nidulans FGSC A4], ref\|XP_41...	131.0	[0..3]	[107..31]
gi\|49075540, gi\|... - gi\|71020259\|ref\|XP_760360.1\| hypothetical protein UM04213.1 [Ustilago maydis 521], ref\|XP_401828.1\| ...	125.0	[0..5]	[126..15]

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Predicted Domain #1

Region A:
Residues: [1-122]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MASPKCLPES NYSTSHLRFP RLQSITSKKN SRARGDWGLK RTLPKIKTRY ICVRQQDSLY  60
   61 KQADFQSSAK FVRLVRNWFD AGFVRDPSEV ALLQELLKET GLKDTRDINK VFSPSKQSDE 120
  121 ND

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [123-291]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NFRRYGVSGG IQYSNVPLIN SRVTPNCESN CSNIRRRLTA HIISSDASTA YYGLGGLILR  60
   61 LPRTVVFNRN RSSPLFSQEQ RISYTVYKNG RLRLVPFSGP ELETHLAYPS EDSEVESFFN 120
  121 RDIQLVAKRD SSLDAPVSYQ RGIMKFFMAP SQTSNNEANS SEKDNLSNS

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits