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View Structure Prediction Details

Protein: gi|109129959
Organism: Macaca mulatta
Length: 328 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|109129959.

Description E-value Query
Range
Subject
Range
GPM6B_MOUSE - Neuronal membrane glycoprotein M6-b OS=Mus musculus GN=Gpm6b PE=1 SV=2
0.0 [1..328] [1..328]
gi|55729342 - gi|55729342|emb|CAH91404.1| hypothetical protein [Pongo abelii]
gi|55729342|emb|... - hypothetical protein [Pongo pygmaeus]
0.0 [1..328] [1..328]
gi|76666247 - gi|76666247|ref|XP_869276.1| PREDICTED: similar to Neuronal membrane glycoprotein M6-b (M6b) isoform...
0.0 [5..328] [1..324]
ENSPTRT00000050546 - null
ENSCJAT00000007761 - null
gi|109129963 - gi|109129963|ref|XP_001098845.1| PREDICTED: glycoprotein M6B isoform 3 [Macaca mulatta]
gi|119619253, gi... - gi|50263050|ref|NP_001001996.1| glycoprotein M6B isoform 2 [Homo sapiens], gi|28703833|gb|AAH47295.1...
gi|190690045, gi... - gi|190691419|gb|ACE87484.1| glycoprotein M6B protein [synthetic construct], gi|190690045|gb|ACE86797...
0.0 [1..299] [1..299]

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Predicted Domain #1
Region A:
Residues: [1-70]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKPAMETAAE ENTEQSQERK VNSRAEMEIG RYHWMYPGSK NHQYHPVPTL GDRASPLSSP  60
   61 GCFECCIKCL 

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

    MCM
Score
GO
Score
GO
Term
SCOP
Match
SCOP Description
View Download 0.466 N/A N/A a.44.1 Disulphide-bond formation facilitator (DSBA), insertion domain
View Download 0.445 N/A N/A a.126.1 Serum albumin-like
View Download 0.441 N/A N/A d.49.1 Signal recognition particle alu RNA binding heterodimer, SRP9/14
View Download 0.398 N/A N/A d.47.1 Ribosomal protein L11, N-terminal domain
View Download 0.353 N/A N/A a.28.3 Retrovirus capsid protein C-terminal domain

Predicted Domain #2
Region A:
Residues: [71-131]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 GGVPYASLVA TILCFSGVAL FCGCGHVALA GTVAILEQHF STNASDHALL SEVIQLMQYV  60
   61 I

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.

Predicted Domain #3
Region A:
Residues: [132-328]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 YGIASFFFLY GIILLAEGFY TTSAVKELHG EFKTTACGRC ISGMFVFLTY VLGVAWLGVF  60
   61 GFSAVPVFMF YNIWSTCEVI KSPQTNGTTG VEQICVDIRQ YGIIPWNAFP GKICGSALEN 120
  121 ICNTNEFYMS YHLFIVACAG AGATVIALIH FLMILSSNWA YLKDASKMQA YQDIKAKEEQ 180
  181 ELQDIQSRSK EQLNSYT

[Run NCBI BLAST on this sequence.]

Detection Method: MSA

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

Found no structure predictions for this domain.


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