Protein: | YII3_SCHPO |
Organism: | Schizosaccharomyces pombe 972h- |
Length: | 625 amino acids |
Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YII3_SCHPO.
Description | E-value | Query Range |
Subject Range |
|
224.0 | [0..15] | [624..63] |
|
210.0 | [0..2] | [585..14] |
|
209.0 | [0..11] | [622..57] |
|
205.0 | [0..6] | [613..47] |
|
204.0 | [0..6] | [622..54] |
|
203.0 | [0..5] | [623..35] |
Region A: Residues: [1-150] |
1 11 21 31 41 51 | | | | | | 1 MSETTKSGSK KSGQTSRRAI HSCLACRRKK LKCDHGRPCS NCLKRSTIQS CIYIDPGKTN 60 61 YDKRFERGSE ADELIDQLLS RVSMLEKRLN EVGTKSQSDY ENQQSHNLPS TPSADAETQR 120 121 NIGSLSVLDD TKSQYANYSS SSHVLWHLRN |
Detection Method: | |
Confidence: | 4.39794 |
Match: | 1pyiA |
Description: | PPR1 |
Matching Structure (courtesy of the PDB): |
Term | Confidence | Notes |
transcription regulator activity | 4.56444258780502 | bayes_pls_golite062009 |
DNA binding | 4.26146437716972 | bayes_pls_golite062009 |
nucleic acid binding | 4.17369933547911 | bayes_pls_golite062009 |
transcription factor activity | 3.049435548132 | bayes_pls_golite062009 |
binding | 2.91929847152301 | bayes_pls_golite062009 |
RNA polymerase II transcription factor activity | 2.03201524223606 | bayes_pls_golite062009 |
sequence-specific DNA binding | 1.87955444697212 | bayes_pls_golite062009 |
specific RNA polymerase II transcription factor activity | 1.86200506906385 | bayes_pls_golite062009 |
transcription activator activity | 0.915626626047549 | bayes_pls_golite062009 |
Region A: Residues: [151-255] |
1 11 21 31 41 51 | | | | | | 1 YHYLNLDQDI QEENDSLISP FFFRISPNES AYDYLPPKKV SDILIEQFFF RCHMLINVLH 60 61 RPTFYVRYND FWEKPHLRKP AFTSLLYAIY ASALLATPVE VQKTW |
Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.
MCM Score |
SCOP Match |
SCOP Description | ||
View | Download | 0.651 | a.1.1 | Globin-like |
View | Download | 0.548 | a.26.1 | 4-helical cytokines |
View | Download | 0.607 | a.1.1 | Globin-like |
View | Download | 0.529 | a.1.1 | Globin-like |
View | Download | 0.506 | a.1.1 | Globin-like |
Region A: Residues: [256-384] |
1 11 21 31 41 51 | | | | | | 1 ALGEDERYLQ VDYHQAFRYA LASSNFLFEP DLNALQALVL CQVVFDSDRI RAPPSLVGLI 60 61 LHVALCMGLH RDGSLYGLNP VISEIRRRVW ANIVLSDLRT SETIGYPPQI VEGNYDTRLP 120 121 SALPDEIHN |
Detection Method: | |
Confidence: | 19.958607 |
Match: | PF04082.9 |
Description: | No description for PF04082.9 was found. |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.
Region A: Residues: [385-625] |
1 11 21 31 41 51 | | | | | | 1 VDSSVIISEA TFVNIITKVS RAYSKCLKVL LGIIAPNYTR LLELDRELSN FFKELIEVNI 60 61 PTSNTMHERH IRLLVSYLSN RFPILLHFPF LLKKNSAQFA YSHSRALESA TLALNQLYEL 120 121 GSNPEYSKYS WYLWRYPPFH PCIVLLLDLL NSQKIIYLDD ERVVLLNKIF SLFPRSSGKE 180 181 HYQKAWALLQ TSRAKVWEKL GLSTVDVSTT DVRLTNFEFF DANNLDINWD DWDAIFQHCP 240 241 F |
Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.
Found no structure predictions for this domain.