YRC Public Data Repository - Protein Structure Prediction

Protein:	RCF2_SCHPO
Organism:	Schizosaccharomyces pombe 972h-
Length:	242 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RCF2_SCHPO.

Description	E-value	Query Range	Subject Range
gi\|46107560, gi\|... - gi\|46107560\|ref\|XP_380839.1\| hypothetical protein FG00663.1 [Gibberella zeae PH-1], gi\|42545550\|gb\|E...	312.0	[0..1]	[217..1]
gi\|58257419 - gi\|58257419\|gb\|AAW69331.1\| hypothetical protein [Magnaporthe grisea] gi\|38109735, gi\|... - gi\|39950384\|ref\|XP_363284.1\| conserved hypothetical protein [Magnaporthe grisea 70-15], gb\|EAA55559....	271.0	[0..1]	[221..1]
gi\|88185957, gi\|... - gi\|88185957\|gb\|EAQ93425.1\| hypothetical protein CHGG_01660 [Chaetomium globosum CBS 148.51], gi\|1161...	268.0	[0..1]	[217..1]
gi\|40747028, gi\|... - gi\|67517771\|ref\|XP_658670.1\| hypothetical protein AN1066.2 [Aspergillus nidulans FGSC A4], ref\|XP_40...	267.0	[0..1]	[216..1]
gi\|83766700 - gi\|83766700\|dbj\|BAE56840.1\| unnamed protein product [Aspergillus oryzae] gi\|220693543, gi... - gi\|238498068\|ref\|XP_002380269.1\| mitochondrial hypoxia responsive domain protein [Aspergillus flavus... gi\|169768744 - gi\|169768744\|ref\|XP_001818842.1\| hypothetical protein [Aspergillus oryzae RIB40]	242.0	[0..1]	[221..1]
gi\|28926826, gi\|... - gi\|32422757\|ref\|XP_331822.1\| hypothetical protein [Neurospora crassa], gi\|28926826\|gb\|EAA35790.1\| co... gi\|85116256 - gi\|85116256\|ref\|XP_965026.1\| hypothetical protein NCU02623 [Neurospora crassa OR74A]	240.0	[0..1]	[216..1]
gi\|169597653, gi... - gi\|169597653\|ref\|XP_001792250.1\| hypothetical protein SNOG_01614 [Phaeosphaeria nodorum SN15], gi\|11...	239.0	[0..1]	[215..1]
gi\|19309405, gi\|... - gi\|41581303\|emb\|CAE47952.1\| hypothetical protein, conserved [Aspergillus fumigatus], gi\|19309405\|emb...	237.0	[0..1]	[220..1]
gi\|159131348 - gi\|159131348\|gb\|EDP56461.1\| mitochondrial hypoxia responsive domain protein [Aspergillus fumigatus A... gi\|70995676, gi\|... - gi\|70995676\|ref\|XP_752593.1\| mitochondrial hypoxia responsive domain protein [Aspergillus fumigatus ...	235.0	[0..1]	[223..1]

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Predicted Domain #1

Region A:
Residues: [1-242]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKLSTPEEVK AFNRNTYSAL FKGALVGSSL GIAGWLIGNR YSAGFRRLPF SLKSWLVIGS  60
   61 GSGASIIFAD KAGLKFEAER YGKFDQIDYS TKGLPWNQRA LYYFNEHKWP IILGTWASTM 120
  121 GLSLYAASRN RYDTAPQKLI QARMYAQGVT VVVLLGSVYL STLANRLEPL EREVLVTDPS 180
  181 NPTKLVAFKQ RKERYPGELQ WEVLVSQDEE RLRKLNLPLR EPHGSTGPMS TPTPALNSSR 240
  241 SA

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits