YRC Public Data Repository - Protein Structure Prediction

Protein:	MDM34_SCHPO
Organism:	Schizosaccharomyces pombe 972h-
Length:	452 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for MDM34_SCHPO.

Description	E-value	Query Range	Subject Range
gi\|46124717, gi\|... - gi\|46124717\|ref\|XP_386912.1\| hypothetical protein FG06736.1 [Gibberella zeae PH-1], gi\|42553537\|gb\|E...	501.0	[0..1]	[388..1]
MDM34_MAGO7 - Mitochondrial distribution and morphology protein 34 OS=Magnaporthe oryzae (strain 70-15 / ATCC MYA-...	489.0	[0..1]	[392..1]
gi\|32403660, gi\|... - gi\|32403660\|ref\|XP_322443.1\| hypothetical protein [Neurospora crassa], gi\|28918923\|gb\|EAA28592.1\| hy... MDM34_NEUCR - Mitochondrial distribution and morphology protein 34 OS=Neurospora crassa (strain ATCC 24698 / 74-OR...	483.0	[0..1]	[392..1]
MDM34_EMENI - Mitochondrial distribution and morphology protein 34 OS=Emericella nidulans (strain FGSC A4 / ATCC 3... MDM34_EMENI - Mitochondrial distribution and morphology protein 34 OS=Emericella nidulans GN=mdm34 PE=3 SV=1	477.0	[0..1]	[392..1]
MDM34_ASPFU - Mitochondrial distribution and morphology protein 34 OS=Neosartorya fumigata (strain ATCC MYA-4609 /... MDM34_ASPFU - Mitochondrial distribution and morphology protein 34 OS=Aspergillus fumigatus GN=mdm34 PE=3 SV=1	456.0	[0..1]	[388..1]
MDM34_ASPFN - Mitochondrial distribution and morphology protein 34 OS=Aspergillus flavus (strain ATCC 200026 / FGS... MDM34_ASPOR - Mitochondrial distribution and morphology protein 34 OS=Aspergillus oryzae GN=mdm34 PE=3 SV=1 MDM34_ASPOR - Mitochondrial distribution and morphology protein 34 OS=Aspergillus oryzae (strain ATCC 42149 / RIB ...	451.0	[0..1]	[388..1]
MDM34_CHAGB - Mitochondrial distribution and morphology protein 34 OS=Chaetomium globosum GN=MDM34 PE=3 SV=1 MDM34_CHAGB - Mitochondrial distribution and morphology protein 34 OS=Chaetomium globosum (strain ATCC 6205 / CBS ...	426.0	[0..1]	[392..1]
MDM34_COCIM - Mitochondrial distribution and morphology protein 34 OS=Coccidioides immitis (strain RS) GN=MDM34 PE... MDM34_COCIM - Mitochondrial distribution and morphology protein 34 OS=Coccidioides immitis GN=MDM34 PE=3 SV=1	420.0	[0..1]	[387..1]
gi\|114197693, gi... - gi\|115492411\|ref\|XP_001210833.1\| conserved hypothetical protein [Aspergillus terreus NIH2624], gi\|11...	362.0	[0..1]	[391..1]
MDM34_USTMA - Mitochondrial distribution and morphology protein 34 OS=Ustilago maydis GN=MDM34 PE=3 SV=1 MDM34_USTMA - Mitochondrial distribution and morphology protein 34 OS=Ustilago maydis (strain 521 / FGSC 9021) GN=...	308.0	[0..1]	[226..1]

Back

Predicted Domain #1

Region A:
Residues: [1-147]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSFRVKGWSD QFSESFYERA TTLLTAALNK GTKHSMIADH ITVKELDLGP QPPQLEILEV  60
   61 GDLAPDRFQG LFNLHYSGDA SLVLQTKIRA NPLSVQKSNV PSFSSRNTML ASRAPLTVPM 120
  121 FLRLSDLKLN GIVVLVFSKQ KGITVVF

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [148-288]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 RNDPLESVRV SSSFDSIPAI ARFLQREIEV QLVSLFQEEL PSIIYKMSRI WFAKSDSNLS  60
   61 FQKIPFTSPN QSHTSLANYN PDLLDGPPDY HESTKVDTHL PIKMGPLDVQ THPNIRSIAS 120
  121 LALSRKALLP ISSPSIPMSI Y

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #3

Region A:
Residues: [289-452]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 RSTPPDTIIQ QLTTQSDDIS AVSSPATQYS ASDYLGSNDT TARPSIFGRS HGTSQFRRRE  60
   61 RVKKRHVIKI HEASNKSASS SETFVGSKNV DLTESAFDSI PDTPTKIITN INKLKRNYTI 120
  121 TNNWLENLQQ KIPSEVDNGK VSGLQYSAFK LLMLQRLMAA KGSF

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits