YRC Public Data Repository - Protein Structure Prediction

Protein:	YCKC_SCHPO
Organism:	Schizosaccharomyces pombe 972h-
Length:	821 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for YCKC_SCHPO.

Description	E-value	Query Range	Subject Range
gi\|32417808, gi\|... - gi\|32417808\|ref\|XP_329382.1\| hypothetical protein [Neurospora crassa], gi\|28927045\|gb\|EAA36003.1\| hy... gi\|85117365 - gi\|85117365\|ref\|XP_965239.1\| hypothetical protein [Neurospora crassa OR74A]	821.0	[0..9]	[808..72]
gi\|42554377, gi\|... - gi\|46125967\|ref\|XP_387537.1\| hypothetical protein FG07361.1 [Gibberella zeae PH-1], gi\|42554377\|gb\|E...	817.0	[0..7]	[812..41]
gi\|67524975, gi\|... - gi\|67524975\|ref\|XP_660549.1\| hypothetical protein AN2945.2 [Aspergillus nidulans FGSC A4], ref\|XP_40...	785.0	[0..7]	[811..23]
gi\|114196729, gi... - gi\|115384980\|ref\|XP_001209037.1\| conserved hypothetical protein [Aspergillus terreus NIH2624], gi\|11...	727.0	[0..6]	[812..22]
gi\|90307368, gi\|... - gi\|90307368\|gb\|EAS36999.1\| hypothetical protein CIMG_02353 [Coccidioides immitis RS], gi\|119195957\|r...	716.0	[0..6]	[812..16]
gi\|83766256 - gi\|83766256\|dbj\|BAE56399.1\| unnamed protein product [Aspergillus oryzae] gi\|169767860 - gi\|169767860\|ref\|XP_001818401.1\| hypothetical protein [Aspergillus oryzae RIB40]	703.0	[0..7]	[812..30]
gi\|71000215, gi\|... - gi\|71000215\|ref\|XP_754812.1\| PX domain protein [Aspergillus fumigatus Af293], gi\|66852449\|gb\|EAL9277...	687.0	[0..7]	[802..29]
gi\|111067147 - gi\|111067147\|gb\|EAT88267.1\| hypothetical protein SNOG_04507 [Phaeosphaeria nodorum SN15]	658.0	[0..9]	[810..45]
gi\|71005354, gi\|... - gi\|71005354\|ref\|XP_757343.1\| hypothetical protein UM01196.1 [Ustilago maydis 521], ref\|XP_398811.1\| ...	636.0	[0..2]	[742..44]
gi\|44983182 - gi\|44983182\|gb\|AAS52364.1\| AEL320Wp [Ashbya gossypii ATCC 10895] gi\|45190286, gi\|... - gi\|45190286\|ref\|NP_984540.1\| AEL320Wp [Ashbya gossypii ATCC 10895], gi\|44983182\|gb\|AAS52364.1\| AEL32...	574.0	[0..8]	[769..4]

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Predicted Domain #1

Region A:
Residues: [1-156]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MDTASPEEID ALKRHYLKKE LFSLLIADEL NFVSEPTNLD HLGSPFVEKG KSVIPYEKSQ  60
   61 IPVLRFIFKR FILTFPFLDP DSQNQLWNVN FRNLLKSLSK SNVSVLPDDS DATHLHKWLL 120
  121 KFQNMLTLLM SRAFHSIQDE KNINIELLDT PKLEKD

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [157-359]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 LHKSELQQKP NILEAYVLGV RQSTQAKMLR TKRVYEYLIK VSYEENTFFI ARKYSDFSHF  60
   61 HHLLLKSYPN AYVPRLPPKD DHDTYLNSSE DSTLSPLPSR SSDTNDPQSD SQHVLRQERM 120
  121 RIELRQYIKN ILNDDELHLT EEVLSFLTDD PVTLTASELT DINFRQELDV IRQLEQQKFV 180
  181 EIASQRAKEL DVYMEEFKRS LTE

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	13.69897
Match:	2dybA
Description:	No description for 2dybA was found.

Predicted Domain #3

Region A:
Residues: [360-567]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 NNGFTTLFTE LKEKNSISEL SPSLQKTIEW ARVNLASTIY DTFIGKEKSL ETYLQIKKMH  60
   61 QLFPYTVIKN IMRFSNPLSV MKRILDTLLA QPFGMKSLFQ RLLSISLNEN VRAIHKLISR 120
  121 YEARIVSPEI LTKIQEQVEN PCKAAREVLE KKQMKRHDYL YFILISDDVP PKLPDNLIRR 180
  181 VYAERTAWKA ALDSEDYPTD PTVIRRSK

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #4

Region A:
Residues: [568-821]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 RYGYMMKLMH LYAKQFNKRR SISLISEGAT GEIMKSMVDS PELNPNILVE QFIDLVRRHE  60
   61 DSFYDFVHRV YLHDSGLFAS LMEWIENIIG FLRQGTSAPI DMDLVVDALD EESRQALDVE 120
  121 LNKLLKWNQR KKSALFLRKT TKYIPGEETS LPVTMDELGI DEEIMAELRG DEDDQDENDQ 180
  181 VTKVEEEHME DDDSVEEFDP IIEERQRMKR KANRPANIIP PKPKLRTVKT LLPAFKEQVY 240
  241 PILHKFVSEN EKDI

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits