YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|110614042, gi...
Organism:	Shigella flexneri 5 str. 8401
Length:	175 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|110614042, gi....

Description	E-value	Query Range	Subject Range
gi\|30040211, gi\|... - gi\|30061967\|ref\|NP_836138.1\| primosomal replication protein N'' [Shigella flexneri 2a str. 2457T], g...	198.0	[0..1]	[175..1]
gi\|194432719, gi... - gi\|83570199\|ref\|ZP_00921645.1\| COG3923: Primosomal replication protein N'' [Shigella dysenteriae 101...	196.0	[0..1]	[175..1]
gi\|74311046, gi\|... - gi\|74311046\|ref\|YP_309465.1\| primosomal replication protein N'' [Shigella sonnei Ss046], gi\|73854523...	196.0	[0..1]	[175..1]
gi\|75514590, gi\|... - gi\|75514590\|ref\|ZP_00736845.1\| COG3923: Primosomal replication protein N'' [Escherichia coli 53638],... gi\|157159994, gi... - gi\|75194687\|ref\|ZP_00704757.1\| COG3923: Primosomal replication protein N'' [Escherichia coli HS], gi... gi\|124530282, gi... - gi\|124530282\|ref\|ZP_01701001.1\| Primosomal replication priB and priC [Escherichia coli B], gi\|124499... gi\|169756073, gi... - gi\|170021145\|ref\|YP_001726099.1\| primosomal replication protein N'' [Escherichia coli ATCC 8739], gi...	196.0	[0..1]	[175..1]
EG10765 - primosomal replication protein N'' / Primosomal protein n gi\|170080052, gi... - gi\|170080052\|ref\|YP_001729372.1\| primosomal replication protein N'' [Escherichia coli str. K-12 subs... gi\|218693929, gi... - gi\|218693929\|ref\|YP_002401596.1\| primosomal replication protein N'' [Escherichia coli 55989], gi\|218... EG10765 - primosomal replication protein N'' / Primosomal protein n gi\|194423684, gi... - gi\|83587078\|ref\|ZP_00925708.1\| COG3923: Primosomal replication protein N'' [Escherichia coli 101-1],... gi\|157157537, gi... - gi\|75189535\|ref\|ZP_00702802.1\| COG3923: Primosomal replication protein N'' [Escherichia coli E24377A... gi\|89107336, gi\|... - gi\|89107336\|ref\|AP_001116.1\| primosomal replication protein N'' [Escherichia coli str. K-12 substr. ... gi\|238899754, gi... - gi\|238899754\|ref\|YP_002925550.1\| primosomal replication protein N'' [Escherichia coli BW2952], gi\|23... gi\|251783976, gi... - gi\|251783976\|ref\|YP_002998280.1\| hypothetical protein B21_00423 [Escherichia coli BL21], gi\|24237624... gi\|253325587, gi... - gi\|254287340\|ref\|YP_003053088.1\| primosomal replication protein N'' [Escherichia coli BL21(DE3)], gi... gi\|254160536, gi... - gi\|254160536\|ref\|YP_003043644.1\| primosomal replication protein N'' [Escherichia coli B str. REL606]... PRIC_ECOLI - Primosomal replication protein N'' - Escherichia coli	195.0	[0..1]	[175..1]
gi\|192929183, gi... - gi\|75257888\|ref\|ZP_00729366.1\| COG3923: Primosomal replication protein N'' [Escherichia coli E22], g... gi\|192959044, gi... - gi\|75239037\|ref\|ZP_00723019.1\| COG3923: Primosomal replication protein N'' [Escherichia coli E110019... gi\|190902446, gi... - gi\|75229372\|ref\|ZP_00715927.1\| COG3923: Primosomal replication protein N'' [Escherichia coli B7A], g... gi\|75209777, gi\|... - gi\|75209777\|ref\|ZP_00709979.1\| COG3923: Primosomal replication protein N'' [Escherichia coli B171], ... gi\|187427512, gi... - gi\|75177589\|ref\|ZP_00697670.1\| COG3923: Primosomal replication protein N'' [Shigella boydii BS512], ... gi\|209917683, gi... - gi\|209917683\|ref\|YP_002291767.1\| primosomal replication protein N'' [Escherichia coli SE11], gi\|2099... gi\|218359801, gi... - gi\|218553033\|ref\|YP_002385946.1\| primosomal replication protein N'' [Escherichia coli IAI1], gi\|2183...	195.0	[0..1]	[175..1]
gi\|82542960, gi\|... - gi\|82542960\|ref\|YP_406907.1\| primosomal replication protein N'' [Shigella boydii Sb227], gi\|81244371...	195.0	[0..1]	[175..1]
gi\|82775802, gi\|... - gi\|82775802\|ref\|YP_402149.1\| primosomal replication protein N'' [Shigella dysenteriae Sd197], gi\|812...	194.0	[0..1]	[175..1]
gi\|168786319, gi... - gi\|189373733\|gb\|EDU92149.1\| primosomal replication protein N'' [Escherichia coli O157:H7 str. EC869]... gi\|189002714, gi... - gi\|189002714\|gb\|EDU71700.1\| primosomal replication protein N'' [Escherichia coli O157:H7 str. EC4076... gi\|168777164, gi... - gi\|187767568\|gb\|EDU31412.1\| primosomal replication protein N'' [Escherichia coli O157:H7 str. EC4196... gi\|189362400, gi... - gi\|189362400\|gb\|EDU80819.1\| primosomal replication protein N'' [Escherichia coli O157:H7 str. EC4486... gi\|208815314, gi... - gi\|208815314\|ref\|ZP_03256493.1\| primosomal replication protein N'' [Escherichia coli O157:H7 str. EC... gi\|208727473, gi... - gi\|208807672\|ref\|ZP_03250009.1\| primosomal replication protein N'' [Escherichia coli O157:H7 str. EC... gi\|195936030 - gi\|195936030\|ref\|ZP_03081412.1\| primosomal replication protein N'' [Escherichia coli O157:H7 str. EC... gi\|168798032, gi... - gi\|189379337\|gb\|EDU97753.1\| primosomal replication protein N'' [Escherichia coli O157:H7 str. EC508]... gi\|168760377, gi... - gi\|189369094\|gb\|EDU87510.1\| primosomal replication protein N'' [Escherichia coli O157:H7 str. EC4501... gi\|189358111, gi... - gi\|189358111\|gb\|EDU76530.1\| primosomal replication protein N'' [Escherichia coli O157:H7 str. EC4401... gi\|188017708, gi... - gi\|188017708\|gb\|EDU55830.1\| primosomal replication protein N'' [Escherichia coli O157:H7 str. EC4113... gi\|254591050, gi... - gi\|254791650\|ref\|YP_003076487.1\| primosomal replication protein N'' [Escherichia coli O157:H7 str. T... gi\|217320699, gi... - gi\|217324478\|ref\|ZP_03440562.1\| primosomal replication protein N'' [Escherichia coli O157:H7 str. TW... gi\|209400394, gi... - gi\|209400394\|ref\|YP_002269117.1\| primosomal replication protein N'' [Escherichia coli O157:H7 str. E... gi\|208822938, gi... - gi\|208822938\|ref\|ZP_03263256.1\| primosomal replication protein N'' [Escherichia coli O157:H7 str. EC... gi\|13359977, gi\|... - gi\|15829774\|ref\|NP_308547.1\| primosomal replication protein N'' [Escherichia coli O157:H7 str. Sakai... gi\|209778422, gi... - pir\|\|H90693 primosomal replication protein N'' [imported] - Escherichia coli (strain O157:H7, substr... gi\|13359977, gi\|... - gi\|15829774\|ref\|NP_308547.1\| primosomal replication protein N'' [Escherichia coli O157:H7], gi\|13359...	190.0	[0..1]	[175..1]
gi\|56128621, gi\|... - gi\|56414364\|ref\|YP_151439.1\| primosomal replication protein N'' [Salmonella enterica subsp. enterica... gi\|197363284, gi... - gi\|197363284\|ref\|YP_002142921.1\| primosomal replication protein N'' [Salmonella enterica subsp. ente...	190.0	[0..1]	[175..1]

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Predicted Domain #1

Region A:
Residues: [1-175]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MKTALLLEKL EGQLATLRQR CAPVSQFATL SARFDRHLFQ TRATTLQSCL DEAGDNLAAL  60
   61 RHAVEQQQLP QVAWLAEHLA AQLEAIAREA SAWSLREWDS APPKISRWQR KRIQHQDFER 120
  121 RLREMVAERR ARLARVTDLV EQQTLHREVE AYEARLARCR HALEKIENRL ARLTR

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	1.5
Match:	2i1jA
Description:	No description for 2i1jA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits