YRC Public Data Repository - Protein Structure Prediction

Protein:	GPIX_MOUSE
Organism:	Mus musculus
Length:	177 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for GPIX_MOUSE.

Description	E-value	Query Range	Subject Range
gi\|71891595, gi\|... - gi\|73532774\|ref\|NP_001026995.1\| glycoprotein IX (platelet) [Rattus norvegicus], gi\|71891595\|dbj\|BAE1...	120.0	[0..1]	[177..13]
gi\|76649620 - gi\|76649620\|ref\|XP_875064.1\| PREDICTED: similar to Platelet glycoprotein IX precursor (GPIX) (CD42A)...	117.0	[0..1]	[139..355]
gi\|20988414 - gi\|20988414\|gb\|AAH30229.1\| Glycoprotein IX (platelet) [Homo sapiens] gi\|123993323, gi... - gi\|61364625\|gb\|AAX42575.1\| glycoprotein IX [synthetic construct], gi\|123993323\|gb\|ABM84263.1\| glycop...	111.0	[0..1]	[157..1]
gi\|114589073 - gi\|114589073\|ref\|XP_001140600.1\| PREDICTED: similar to platelet glycoprotein IX precursor [Pan trogl...	110.0	[0..1]	[157..1]
gi\|60810705 - gi\|60810705\|gb\|AAX36152.1\| glycoprotein IX [synthetic construct]	110.0	[0..1]	[157..1]
gi\|212727033, gi... - gi\|214831915\|ref\|NP_001135785.1\| glycoprotein IX (platelet) precursor [Macaca mulatta], gi\|212727033...	105.0	[0..1]	[150..1]
gi\|66499167 - gi\|66499167\|ref\|XP_624568.1\| PREDICTED: similar to kekkon-1 CG12283-PA [Apis mellifera]	105.0	[0..25]	[170..145]
gi\|73984950 - gi\|73984950\|ref\|XP_852017.1\| PREDICTED: similar to Platelet glycoprotein IX precursor (GPIX) (CD42A)...	104.0	[0..1]	[150..1]
gi\|33320664 - gi\|33320664\|gb\|AAQ05970.1\|AF484235_1 peroxidasin [Aedes aegypti]	103.0	[0..27]	[161..104]

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Predicted Domain #1

Region A:
Residues: [1-177]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MTTWGLLFLL WPATTDTQAC PRPCTCQSLE TMGLKVNCEG QGLTALPVIP AHTRQLLLAN  60
   61 NSLRSVPPGA FDHLPQLWDL DVTHNPWHCD CSLTYLRLWL EDHMPEALMH VYCASPDLAT 120
  121 RRPLGQLTGY ELGSCGWKLP PSWAYPGVWW DVSLVAVAVL GLILLAGLLN TFTESRN

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	16.0
Match:	1xkuA
Description:	Crystal structure of the dimeric protein core of decorin, the archetypal small leucine-rich repeat proteoglycan
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits