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View Structure Prediction Details

Protein: gi|109018976
Organism: Macaca mulatta
Length: 397 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|109018976.

Description E-value Query
Range
Subject
Range
LHX9_BOVIN - LIM/homeobox protein Lhx9 OS=Bos taurus GN=LHX9 PE=2 SV=2
3.0E-50 [1..397] [1..397]
gi|114571656 - gi|114571656|ref|XP_001139158.1| PREDICTED: similar to LIM homeobox 9 isoform 2 [Pan troglodytes]
4.0E-49 [1..397] [1..399]
LHX9_MOUSE - LIM/homeobox protein Lhx9 OS=Mus musculus GN=Lhx9 PE=1 SV=3
9.0E-48 [1..397] [1..397]
LHX9_DANRE - LIM/homeobox protein Lhx9 OS=Danio rerio GN=lhx9 PE=2 SV=1
6.0E-47 [1..397] [1..396]
LHX9 - LIM homeobox 9
gi|109018974 - gi|109018974|ref|XP_001110636.1| PREDICTED: LIM homeobox 9 isoform 2 [Macaca mulatta]
gi|114571650 - gi|114571650|ref|XP_525011.2| PREDICTED: LIM homeobox 9 isoform 6 [Pan troglodytes]
1.0E-45 [19..397] [10..388]
gi|29570244 - gi|29570244|gb|AAO85392.1| LIM-homeobox protein 9 [Sus scrofa]
3.0E-44 [1..369] [1..369]
LHX9_RAT - LIM/homeobox protein Lhx9 OS=Rattus norvegicus GN=Lhx9 PE=2 SV=1
8.0E-44 [19..397] [10..388]

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Predicted Domain #1
Region A:
Residues: [1-142]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEIVGCRAED NSCPFRPPAM LFHGISGGHI QGIMEEMERR SKTEARLAKG AQLNGRDAGM  60
   61 PPLSPEKPAL CAGCGGKISD RYYLLAVDKQ WHLRCLKCCE CKLALESELT CFAKDGSIYC 120
  121 KEDYYRRFSV QRCARCHLGI SA

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 9.69897
Match: 2dfyX
Description: No description for 2dfyX was found.

Predicted Domain #2
Region A:
Residues: [143-261]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 SEMVMRARDS VYHLSCFTCS TCNKTLTTGD HFGMKDSLVY CRAHFETLLQ GEYPPQLSYT  60
   61 ELAAKSGGLA LPYFNGTGTV QKGRPRKRKS PALGVDIVNY NSGCNENEAD HLDRDQQPY

[Run NCBI BLAST on this sequence.]

Detection Method: FFAS03
Confidence: 2.99
Match: 2dfyX
Description: No description for 2dfyX was found.

Predicted Domain #3
Region A:
Residues: [262-397]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 PPSQKTKRMR TSFKHHQLRT MKSYFAINHN PDAKDLKQLA QKTGLTKRVL QVWFQNARAK  60
   61 FRRNLLRQEN GGVDKADGTS LPAPPSADSG ALTPPGTATT LTDLTNPTIT VVTSVTSNMD 120
  121 SHESGSPSQT TLTNLF

[Run NCBI BLAST on this sequence.]

Detection Method: PSI-BLAST
Confidence: 12.69897
Match: 2dmqA
Description: No description for 2dmqA was found.

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