YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|21450075, gi\|...
Organism:	Mus musculus
Length:	226 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|21450075, gi|....

Description	E-value	Query Range	Subject Range
gi\|114607495 - gi\|114607495\|ref\|XP_001136227.1\| PREDICTED: similar to testis intracellular mediator protein isoform...	297.0	[0..15]	[226..336]
gi\|109071199 - gi\|109071199\|ref\|XP_001091528.1\| PREDICTED: similar to testis intracellular mediator protein isoform...	294.0	[0..15]	[226..336]
gi\|61554815 - gi\|61554815\|gb\|AAX46619.1\| testis intracellular mediator protein [Bos taurus]	292.0	[0..14]	[226..335]
gi\|73972850 - gi\|73972850\|ref\|XP_852194.1\| PREDICTED: similar to kelch domain containing 3 (predicted) isoform 3 [...	288.0	[0..14]	[226..335]
gi\|33989798 - gi\|33989798\|gb\|AAH06293.2\| C6orf153 protein [Homo sapiens]	211.0	[0..1]	[226..32]
RRP36_MOUSE - Ribosomal RNA processing protein 36 homolog OS=Mus musculus GN=Rrp36 PE=1 SV=1	205.0	[0..1]	[226..19]
gi\|50738604 - gi\|50738604\|ref\|XP_419323.1\| PREDICTED: similar to CDNA sequence BC011248 [Gallus gallus]	187.0	[0..60]	[222..459]
gi\|187038490, gi... - gi\|39588748\|emb\|CAE58272.1\| Hypothetical protein CBG01378 [Caenorhabditis briggsae], gi\|187038490\|em... gi\|157761737 - gi\|157761737\|ref\|XP_001673211.1\| Hypothetical protein CBG01378 [Caenorhabditis briggsae AF16]	181.0	[0..12]	[222..243]

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Predicted Domain #1

Region A:
Residues: [1-226]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEGGEVTGDR LKADTSDMSF EELLRLQGQG RPKAHKQLVA GNSTRTRSPQ QPVCVADKHR  60
   61 PLEMSAKVRV PFLRQVVPIS KKVARDPRFD DLSGDYNPEV FDKTYQFLND IRAKEKQLVK 120
  121 KQLKKHRSGE EHDKLQQLLQ RMEQQEMAQQ ERKQQQELRL ALKQERRAQA QQGHRPYFLK 180
  181 KSEQRQLALA EKFKELRRSK KLESFLSRKR RRNAGKDRRH LPLSKE

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	0.964
Match:	1miuA
Description:	BRCA2 helical domain; BRCA2 tower domain; OB-fold domains of BRCA2
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits