YRC Public Data Repository - Protein Structure Prediction

Protein:	IPI:IPI00359017....
Organism:	Rattus norvegicus
Length:	192 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for IPI:IPI00359017.....

Description	E-value	Query Range	Subject Range
gi\|114555577 - gi\|114555577\|ref\|XP_001169147.1\| PREDICTED: hypothetical protein LOC456758 isoform 3 [Pan troglodyte... gi\|56202931 - gi\|56202931\|emb\|CAI20548.1\| chromosome 1 open reading frame 149 [Homo sapiens]	244.0	[0..1]	[192..1]
gi\|109477213 - gi\|109477213\|ref\|XP_001057055.1\| PREDICTED: similar to Eaf6 CG12756-PA [Rattus norvegicus]	220.0	[0..1]	[177..32]
gi\|109002108 - gi\|109002108\|ref\|XP_001111537.1\| PREDICTED: similar to Eaf6 CG12756-PA isoform 1 [Macaca mulatta]	219.0	[0..1]	[178..1]
gi\|34364799, gi\|... - gi\|56202933\|emb\|CAI20550.1\| chromosome 1 open reading frame 149 [Homo sapiens], gi\|40255020\|ref\|NP_0... CCDS418.1_1 - null gi\|109002099 - gi\|109002099\|ref\|XP_001111619.1\| PREDICTED: similar to Eaf6 CG12756-PA isoform 3 [Macaca mulatta] gi\|114555579 - gi\|114555579\|ref\|XP_001169172.1\| PREDICTED: hypothetical protein LOC456758 isoform 4 [Pan troglodyte...	214.0	[0..1]	[177..1]
EAF6_XENTR - Chromatin modification-related protein MEAF6 OS=Xenopus tropicalis GN=meaf6 PE=2 SV=1	211.0	[0..1]	[181..1]
EAF6_XENLA - Chromatin modification-related protein MEAF6 OS=Xenopus laevis GN=meaf6 PE=2 SV=1	208.0	[0..1]	[179..1]

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Predicted Domain #1

Region A:
Residues: [1-111]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAMHNKTAPP QIPDTRRELA ELVKRKQELA ETLANLERQI YAFEGSYLED TQMYGNIIRG  60
   61 WDRYLTNQKN SNSKNDRRNR KFKEAERLFS KSSVTSAAAV SALAGVQDQL I

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	43.69897
Match:	PF09340.1
Description:	No description for PF09340.1 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [112-192]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 EKREPGSGTE SDTSPDFHNQ ENEPAQEDPE DLDGSVQGVK PQKAASSTSS GSHHSSHKKR  60
   61 KNKNRHRMNV SPQTGWHQLH L

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits