YRC Public Data Repository - Protein Structure Prediction

Protein:	RM42_MOUSE
Organism:	Mus musculus
Length:	142 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for RM42_MOUSE.

Description	E-value	Query Range	Subject Range
MRPL42 - mitochondrial ribosomal protein L42 gi\|190691543 - gi\|190691543\|gb\|ACE87546.1\| mitochondrial ribosomal protein L42 protein [synthetic construct]	260.0	[0..3]	[142..4]
gi\|197246785, gi... - ref\|XP_216882.1\| similar to RIKEN cDNA 2900055D03 [Rattus norvegicus], gi\|197246785\|gb\|AAI68747.1\| M...	260.0	[0..1]	[142..1]
gi\|28503667, gi\|... - gi\|94388744\|ref\|XP_997324.1\| PREDICTED: similar to mitochondrial ribosomal protein L42 isoform 2 [Mu...	257.0	[0..1]	[142..1]
gi\|114646230, gi... - gi\|114646232\|ref\|XP_001139642.1\| PREDICTED: mitochondrial ribosomal protein L42 isoform 5 [Pan trogl...	256.0	[0..4]	[142..5]
gi\|57096771 - gi\|57096771\|ref\|XP_532651.1\| PREDICTED: similar to Mitochondrial 28S ribosomal protein S32 (S32mt) (...	252.0	[0..3]	[142..4]
RM42_PONAB - 39S ribosomal protein L42, mitochondrial OS=Pongo abelii GN=MRPL42 PE=2 SV=1 RT32_PONPY - Mitochondrial 28S ribosomal protein S32, mitochondrial precursor - Pongo pygmaeus (Orangutan)	249.0	[0..3]	[142..4]
RM42_BOVIN - 39S ribosomal protein L42, mitochondrial OS=Bos taurus GN=MRPL42 PE=1 SV=2	247.0	[0..3]	[142..4]

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Predicted Domain #1

Region A:
Residues: [1-142]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAAAVKWAIS NRTIWKHLLP IQNGALSSAC HKSTYSSLPD DYNCQVDLAL TADGRTIVCY  60
   61 HPSVDIPYEH TKPIPQPDLL HNNEETHEQI LKAKLEVRKS KQLEQGPMIE QLSKVFYTTK 120
  121 HRWYPHGQYH NRRKKLNPPR DR

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits