YRC Public Data Repository - Protein Structure Prediction

Protein:	ACO13_MOUSE
Organism:	Mus musculus
Length:	140 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for ACO13_MOUSE.

Description	E-value	Query Range	Subject Range
gi\|149031533, gi... - gi\|27685797\|ref\|XP_214475.1\| PREDICTED: similar to thioesterase superfamily member 2 [Rattus norvegi...	122.0	[0..1]	[140..1]
gi\|74004150 - gi\|74004150\|ref\|XP_853542.1\| PREDICTED: similar to thioesterase superfamily member 2 [Canis familiar...	119.0	[0..1]	[140..1]
THEM2_PONPY - Thioesterase superfamily member 2 - Pongo pygmaeus (Orangutan) ACOT13 - acyl-CoA thioesterase 13 ACO13_PONAB - Acyl-coenzyme A thioesterase 13 OS=Pongo abelii GN=ACOT13 PE=2 SV=1	119.0	[0..1]	[140..1]
FABZ_PSEE4 - 3-hydroxyacyl-[acyl-carrier-protein] dehydratase FabZ OS=Pseudomonas entomophila (strain L48) GN=fab... gi\|95112171 - gi\|95112171\|emb\|CAK16898.1\| (3R)-hydroxymyristoyl-[acyl carrier protein] dehydratase [Pseudomonas en...	118.0	[0..5]	[137..1]
FABZ_PSEP1 - 3-hydroxyacyl-[acyl-carrier-protein] dehydratase FabZ OS=Pseudomonas putida (strain F1 / ATCC 700007... tr\|I7BG72\|I7BG72... - 3-hydroxyacyl-[acyl-carrier-protein] dehydratase FabZ OS=Pseudomonas putida (strain DOT-T1E) GN=fabZ... tr\|E4RFQ7\|E4RFQ7... - 3-hydroxyacyl-[acyl-carrier-protein] dehydratase FabZ OS=Pseudomonas putida (strain BIRD-1) GN=fabZ ... FABZ_PSEPG - 3-hydroxyacyl-[acyl-carrier-protein] dehydratase FabZ OS=Pseudomonas putida (strain GB-1) GN=fabZ PE... FABZ_PSEPK - 3-hydroxyacyl-[acyl-carrier-protein] dehydratase FabZ OS=Pseudomonas putida (strain KT2440) GN=fabZ ...	118.0	[0..5]	[137..1]
gi\|24983083, gi\|... - gi\|26988334\|ref\|NP_743759.1\| (3R)-hydroxymyristoyl-ACP dehydratase [Pseudomonas putida KT2440], gi\|2...	118.0	[0..5]	[137..18]
gi\|114605683 - gi\|114605683\|ref\|XP_001171713.1\| PREDICTED: hypothetical protein [Pan troglodytes]	118.0	[0..1]	[140..1]
FABZ_AROAE - 3-hydroxyacyl-[acyl-carrier-protein] dehydratase FabZ OS=Aromatoleum aromaticum (strain EbN1) GN=fab...	116.0	[0..6]	[138..1]
FABZ_PSEU2 - 3-hydroxyacyl-[acyl-carrier-protein] dehydratase FabZ OS=Pseudomonas syringae pv. syringae (strain B... FABZ_PSE14 - 3-hydroxyacyl-[acyl-carrier-protein] dehydratase FabZ OS=Pseudomonas savastanoi pv. phaseolicola (st... tr\|F3G1L3\|F3G1L3... - 3-hydroxyacyl-[acyl-carrier-protein] dehydratase FabZ OS=Pseudomonas syringae pv. pisi str. 1704B GN... gi\|237800154 - gi\|237800154\|ref\|ZP_04588615.1\| (3R)-hydroxymyristoyl-ACP dehydratase [Pseudomonas syringae pv. oryz...	115.0	[0..5]	[137..1]
gi\|52346102, gi\|... - gi\|52346102\|ref\|NP_001005098.1\| MGC89869 protein [Xenopus (Silurana) tropicalis], gi\|49900160\|gb\|AAH...	115.0	[0..1]	[140..1]

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Predicted Domain #1

Region A:
Residues: [1-140]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSSMTQNLRE VMKVMFKVPG FDRVLEKVTL VSAAPEKLIC EMKVEEQHTN KLGTLHGGLT  60
   61 ATLVDSISTM ALMCTERGAP GVSVDMNITY MSPAKIGEEI VITAHILKQG KTLAFASVDL 120
  121 TNKTTGKLIA QGRHTKHLGN

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	27.522879
Match:	2cy9A
Description:	Crystal structure of thioesterase superfamily member2 from Mus musculus
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
binding	0.475677115073074	bayes_pls_golite062009
protein binding	0.0641694633066071	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: