YRC Public Data Repository - Protein Structure Prediction

Protein:	NDUB7_MOUSE
Organism:	Mus musculus
Length:	137 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for NDUB7_MOUSE.

Description	E-value	Query Range	Subject Range
NDUFB7 - NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 7, 18kDa gi\|123981992, gi... - gi\|123996819\|gb\|ABM86011.1\| NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 7, 18kDa [synthetic c...	219.0	[0..1]	[137..1]
NDUB7_PONPY - NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 7 OS=Pongo pygmaeus GN=NDUFB7 PE=2 SV=3 gi\|111662058 - gi\|111662058\|gb\|ABH12200.1\| mitochondrial complex I subunit NDUFB7 [Gorilla gorilla] NDUB7_GORGO - NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 7 OS=Gorilla gorilla gorilla GN=NDUFB7 PE=... NDUB7_PONAB - NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 7 OS=Pongo abelii GN=NDUFB7 PE=2 SV=3 gi\|55648479 - gi\|55648479\|ref\|XP_524135.1\| PREDICTED: similar to NADH dehydrogenase (ubiquinone) 1 beta subcomplex...	218.0	[0..1]	[137..1]
NDUB7_BOVIN - NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 7 OS=Bos taurus GN=NDUFB7 PE=1 SV=2	217.0	[0..1]	[137..1]
NDUB7_PANTR - NADH dehydrogenase [ubiquinone] 1 beta subcomplex subunit 7 OS=Pan troglodytes GN=NDUFB7 PE=2 SV=3	217.0	[0..1]	[137..1]
gi\|109123688 - gi\|109123688\|ref\|XP_001111436.1\| PREDICTED: similar to NADH dehydrogenase (ubiquinone) 1 beta subcom...	212.0	[0..1]	[137..1]
gi\|157823197, gi... - gi\|34851467\|ref\|XP_341665.1\| PREDICTED: similar to NADH dehydrogenase (ubiquinone) 1 beta subcomplex...	208.0	[0..1]	[137..1]
gi\|73986646 - gi\|73986646\|ref\|XP_533892.2\| PREDICTED: similar to NADH dehydrogenase (ubiquinone) 1 beta subcomplex...	203.0	[0..1]	[137..1]
gi\|38328313, gi\|... - gi\|41053587\|ref\|NP_957142.1\| NADH dehydrogenase (ubiquinone) 1 beta subcomplex, 7, 18kDa [Danio reri...	188.0	[0..1]	[120..1]
gi\|118777825, gi... - gi\|118777825\|ref\|XP_308300.3\| AGAP007574-PA [Anopheles gambiae str. PEST], gi\|116132087\|gb\|EAA04597.... AGAP007574-PA - NADH dehydrogenase (ubiquinone) 1 beta subcomplex 7\|protein_coding\|2L:47791258:47792012:1\|gene:AGAP0...	180.0	[0..1]	[124..1]

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Predicted Domain #1

Region A:
Residues: [1-137]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MGAHLTRRYL WDASVEPDPE KIPSFPPDLG FPERKERVMV ATQQEMMDAQ LTLQQRDYCA  60
   61 HYLIRLLKCK RDSFPNFLAC KHEQHDWDYC EHLDYVKRMK EFERERRLLQ RKKRRALKEA 120
  121 RVAQGQGEGE VGPEVAL

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	76.173925
Match:	PF05676.4
Description:	No description for PF05676.4 was found.

Shown below are all of our structure predictions for this domain.
Click here to view only most confident match.

		MCM Score	GO Score	GO Term	SCOP Match	SCOP Description
View	Download	0.404	N/A	N/A	d.52.7	Ribosome-binding factor A, RbfA
View	Download	0.374	N/A	N/A	a.1.1	Globin-like
View	Download	0.362	N/A	N/A	a.118.1	ARM repeat
View	Download	0.323	N/A	N/A	a.118.9	ENTH/VHS domain
View	Download	0.294	N/A	N/A	a.118.9	ENTH/VHS domain
View	Download	0.286	N/A	N/A	a.4.14	Description not found.
View	Download	0.269	N/A	N/A	f.14.1	Voltage-gated potassium channels
View	Download	0.223	N/A	N/A	a.1.1	Globin-like
View	Download	0.223	N/A	N/A	a.71.1	Endoplasmic reticulum protein ERP29, C-domain

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits