YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|16716549, gi\|...
Organism:	Mus musculus
Length:	299 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|16716549, gi|....

Description	E-value	Query Range	Subject Range
gi\|74354410, gi\|... - gi\|74355402\|gb\|AAI04400.1\| Vomeronasal 1 receptor, C3 [Mus musculus], gi\|74354410\|gb\|AAI04399.1\| Vom...	379.0	[0..1]	[299..1]
gi\|40557353, gi\|... - gi\|57164047\|ref\|NP_001009527.1\| vomeronasal 1 receptor, C42 [Rattus norvegicus], gi\|40557353\|gb\|AAR8...	371.0	[0..1]	[298..1]

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Predicted Domain #1

Region A:
Residues: [1-299]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFSLENALYI QAGLGVLANM CLLVFYIFMV LGHRPKPMDL ISCQQTFIHI MLFFTAGDIL  60
   61 HTDIFESMNI ENDFKCKTTF YICRVMRGLS ICTTCLLSVF QAVTISPNTS LLAKFKHKLK 120
  121 KYTINAFFYI WSFNLSFSSN LIFYVGAYTN VSETNQMKVT KYCSLFPMNY IIRGLILTVT 180
  181 TSRDVFLVGV MLITSTYMVI ILFRHQRQCK HLHSIRHLRA SPEKRATQTI LLLVIFFVVM 240
  241 YWVDFIISST SVLLWMYDPV ILTVQKFVMN AYPTITPLVQ ISSDNRIINL LKNLQSKCH

[Run NCBI BLAST on this sequence.]

Detection Method:	FFAS03
Confidence:	6.73
Match:	1f88A
Description:	Rhodopsin
Matching Structure (courtesy of the PDB):

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

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Top Sequence Alignment Hits