YRC Public Data Repository - Protein Structure Prediction

Protein:	KCMB2_MOUSE
Organism:	Mus musculus
Length:	235 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for KCMB2_MOUSE.

Description	E-value	Query Range	Subject Range
gi\|74003783 - gi\|74003783\|ref\|XP_545302.2\| PREDICTED: similar to calcium-activated potassium channel beta 2 subuni...	401.0	[0..1]	[235..188]
KCMB2_RAT - Calcium-activated potassium channel subunit beta-2 OS=Rattus norvegicus GN=Kcnmb2 PE=2 SV=1	398.0	[0..1]	[235..1]
gi\|122692469, gi... - gi\|92096694\|gb\|AAI14666.1\| Potassium large conductance calcium-activated channel, subfamily M beta m...	395.0	[0..1]	[235..1]
gi\|109043569, gi... - gi\|109043569\|ref\|XP_001109372.1\| PREDICTED: similar to calcium-activated potassium channel beta 2 su... gi\|123997049, gi... - gi\|123997049\|gb\|ABM86126.1\| potassium large conductance calcium-activated channel, subfamily M, beta... KCNMB2 - potassium large conductance calcium-activated channel, subfamily M, beta member 2 gi\|114590470, gi... - gi\|55621502\|ref\|XP_516884.1\| PREDICTED: calcium-activated potassium channel beta 2 subunit isoform 5... CCDS3223.1_1 - null	395.0	[0..1]	[235..1]

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Predicted Domain #1

Region A:
Residues: [1-235]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFIWTSGRTS SSYRQDEKRN IYQKIRDHDL LDKRKTVTAL KAGEDRAILL GLAMMVCSIM  60
   61 MYFLLGITLL RSYMQSVWTE EAQCALLNVS ITETFNCSFS CGPDCWKLSQ YPCLQVYVNL 120
  121 TSSGERLLLY HTEETMKINQ KCSYIPKCGN NFEESMSLVS VVMENFRRHQ HFPCYSDPEG 180
  181 NQKSVILTKL YSSNVLFHSL FWPTCMMAGG VAIVAMVKLT QYLSLLCERI QRINR

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	154.508638
Match:	PF03185.6
Description:	No description for PF03185.6 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits