YRC Public Data Repository - Protein Structure Prediction

Protein:	PAQRA_MOUSE
Organism:	Mus musculus
Length:	247 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

[What does the above image mean?]

[Show Ginzu Version Information]

Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for PAQRA_MOUSE.

Description	E-value	Query Range	Subject Range
gi\|39580647, gi\|... - gi\|39580647\|emb\|CAE61329.1\| Hypothetical protein CBG05167 [Caenorhabditis briggsae], gi\|187035172\|em... gi\|157773563 - gi\|157773563\|ref\|XP_001664847.1\| hypothetical protein CBG05167 [Caenorhabditis briggsae AF16]	228.0	[0..3]	[231..277]
paqr-2 - status:Partially_confirmed UniProt:Q9N536 protein_id:AAF60489.2	226.0	[0..3]	[231..272]
gi\|149034987, gi... - gi\|82617612\|ref\|NP_001032294.1\| monocyte to macrophage differentiation-associated 2 [Rattus norvegic...	213.0	[0..1]	[247..1]
gi\|56119026, gi\|... - gi\|56119026\|ref\|NP_001007855.1\| adiponectin receptor 2 [Gallus gallus], gi\|53127374\|emb\|CAG31070.1\| ...	210.0	[0..5]	[231..108]
ADR2_MOUSE - Adiponectin receptor protein 2 OS=Mus musculus GN=Adipor2 PE=1 SV=2	209.0	[0..5]	[231..109]
gi\|85719404 - gi\|85719404\|gb\|ABC75392.1\| adiponectin receptor 2 [Anas platyrhynchos]	209.0	[0..5]	[231..108]
gi\|45709323, gi\|... - gi\|46048201\|ref\|NP_940685.2\| monocyte-to-macrophage differentiation factor 2 [Homo sapiens], gi\|4570...	208.0	[0..5]	[247..4]

Back

Predicted Domain #1

Region A:
Residues: [1-247]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MFTLARLLDF QKTKYARFMN DRVPAHKRYQ PTEYEHAANC ATHAFWIIPS ILGSSNLYFL  60
   61 SDDDWETISA WIYGLGLCGL FVVSTIFHTV SWKKSHLRMV EHCLHMIDRM VIYFFIAASY 120
  121 APWLNLRELG PWASHMRWLV WIMASIGTIY VFFFHERYKL VELLCYVVMG FFPALVILSM 180
  181 PNTDGIWELM TGGAFYCLGM VFFKSDGRIP FAHAIWHLFV AFGAGTHYYA IWRYLYLPST 240
  241 LQTKVSK

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	66.431798
Match:	PF03006.11
Description:	No description for PF03006.11 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits