YRC Public Data Repository - Protein Structure Prediction

Protein:	MED29_MOUSE
Organism:	Mus musculus
Length:	199 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for MED29_MOUSE.

Description	E-value	Query Range	Subject Range
gi\|73948362 - gi\|73948362\|ref\|XP_855358.1\| PREDICTED: similar to intersex-like [Canis familiaris]	290.0	[0..35]	[199..77]
gi\|52352487, gi\|... - gi\|52840095\|ref\|NP_060062.1\| mediator complex subunit 29 [Homo sapiens], gi\|52352487\|gb\|AAU43732.1\| ...	287.0	[0..1]	[199..22]
gi\|109124678 - gi\|109124678\|ref\|XP_001086553.1\| PREDICTED: similar to intersex-like [Macaca mulatta]	284.0	[0..1]	[199..22]
gi\|157819649, gi... - gi\|34855419\|ref\|XP_214868.2\| PREDICTED: similar to intersex-like [Rattus norvegicus], gi\|157819649\|r...	281.0	[0..35]	[199..35]
gi\|76641527 - gi\|76641527\|ref\|XP_871568.1\| PREDICTED: similar to intersex-like isoform 1 [Bos taurus]	261.0	[0..1]	[199..1]
MED29_DANRE - Mediator of RNA polymerase II transcription subunit 29 OS=Danio rerio GN=med29 PE=2 SV=1	235.0	[0..30]	[187..12]
MED29_XENTR - Mediator of RNA polymerase II transcription subunit 29 OS=Xenopus tropicalis GN=med29 PE=2 SV=1	232.0	[0..9]	[194..2]
gi\|47207497 - gi\|47207497\|emb\|CAF90844.1\| unnamed protein product [Tetraodon nigroviridis]	231.0	[0..25]	[187..10]
MED29_XENLA - Mediator of RNA polymerase II transcription subunit 29 OS=Xenopus laevis GN=med29 PE=2 SV=1	230.0	[0..30]	[194..7]

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Predicted Domain #1

Region A:
Residues: [1-199]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAAPQPQAAA VSSASGVSGP GSAGGPGPQQ QPQPTQLVGS AQSGLLQQQQ QDFDPVQRYK  60
   61 MLIPQLKESL QTLMKVAAQN LIQNTNIDNG QKSSDAPLQR FDKCLEEFYA LCDQLELCLR 120
  121 LAHECLSQSC DSAKHSPTLV PTATKPDAVQ PDSLPYPQYL AVIKAQITCA KDIHTALLDC 180
  181 ANKVTGKTTA PSTGPGGSL

[Run NCBI BLAST on this sequence.]

Detection Method:

deduced

Shown below is our most confident de novo (Rosetta) prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits