YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|12836479, gi\|...
Organism:	Mus musculus
Length:	260 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|12836479, gi|....

Description	E-value	Query Range	Subject Range
NUDT7_MOUSE - Peroxisomal coenzyme A diphosphatase NUDT7 OS=Mus musculus GN=Nudt7 PE=1 SV=2	211.0	[0..22]	[260..3]
gi\|109508825, gi... - gi\|109508825\|ref\|XP_001076428.1\| PREDICTED: similar to nudix (nucleoside diphosphate linked moiety X...	195.0	[0..22]	[260..3]
gi\|114663788 - gi\|114663788\|ref\|XP_511119.2\| PREDICTED: similar to Peroxisomal coenzyme A diphosphatase NUDT7 (Nucl...	190.0	[0..2]	[260..59]
gi\|113426514, gi... - gi\|113426514\|ref\|XP_001127131.1\| PREDICTED: similar to Peroxisomal coenzyme A diphosphatase NUDT7 (N...	189.0	[0..2]	[260..59]
gi\|109129292 - gi\|109129292\|ref\|XP_001105669.1\| PREDICTED: similar to Peroxisomal coenzyme A diphosphatase NUDT7 (N...	181.0	[0..2]	[260..161]
gi\|76639912 - gi\|76639912\|ref\|XP_581004.2\| PREDICTED: similar to Peroxisomal coenzyme A diphosphatase NUDT7 (Nucle...	170.0	[0..3]	[260..32]

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Predicted Domain #1

Region A:
Residues: [1-260]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MVQSLELPQR QPCHFGSWIK RSPSGLTSKS PSQVLGNNLI DDAKARLRKS DVGTRYSHLS  60
   61 SNKFSVLVPL LARGGKLYLM FTVRSDKLKR EPGEVCFPGG KRDPVDTDDT ATALREAQEE 120
  121 VGLHPHQVEV VSHLVPYVFD NDALVTPVVG FLDHNFQAQP NADEVKEVFF VPLDYFLHPQ 180
  181 VYYQKQITQS GRDFIMHCFE YKDPETGVNY LIQGMTSKLA VLVALIILEQ SPAFKIDFDL 240
  241 HDLIPSCERT FLWRYSLSKL

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	25.09691
Match:	1nqyA
Description:	Coenzyme A pyrophosphatase
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
catalytic activity	1.49075808737475	bayes_pls_golite062009
hydrolase activity	1.08437985755037	bayes_pls_golite062009
binding	0.531719591582995	bayes_pls_golite062009
intramolecular oxidoreductase activity, transposing C=C bonds	0.138509997442311	bayes_pls_golite062009
protein binding	0.137828767485193	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: