YRC Public Data Repository - Protein Structure Prediction

Protein:	LYRM4_MOUSE
Organism:	Mus musculus
Length:	91 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for LYRM4_MOUSE.

Description	E-value	Query Range	Subject Range
gi\|39943160, gi\|... - gi\|39943160\|ref\|XP_361117.1\| hypothetical protein MG03660.4 [Magnaporthe grisea 70-15], gb\|EAA52065....	135.0	[0..1]	[85..1]
gi\|40741617, gi\|... - gi\|67537190\|ref\|XP_662369.1\| hypothetical protein AN4765.2 [Aspergillus nidulans FGSC A4], ref\|XP_40...	134.0	[0..1]	[87..6]
LYRM4 - LYR motif containing 4	122.0	[0..1]	[91..1]
gi\|16306961 - gi\|16306961\|gb\|AAH09552.1\| LYR motif containing 4 [Homo sapiens] gi\|190689721, gi... - gi\|190691085\|gb\|ACE87317.1\| LYR motif containing 4 protein [synthetic construct], gi\|190689721\|gb\|AC... gi\|55625814 - gi\|55625814\|ref\|XP_518217.1\| PREDICTED: hypothetical protein LOC57128 isoform 2 [Pan troglodytes]	122.0	[0..1]	[91..1]
gi\|50734067 - gi\|50734067\|ref\|XP_418962.1\| PREDICTED: similar to chromosome 6 open reading frame 149; CGI-203 prot...	121.0	[0..1]	[84..123]
LYRM4_BOVIN - LYR motif-containing protein 4 OS=Bos taurus GN=LYRM4 PE=3 SV=1	119.0	[0..1]	[90..1]
BCN92_DROSU - Protein bcn92 OS=Drosophila subobscura GN=bcn92 PE=3 SV=1	109.0	[0..4]	[87..2]
ISD11 - Protein required for mitochondrial iron-sulfur cluster biosynthesis ISD11_YEAST - Protein ISD11 OS=Saccharomyces cerevisiae (strain ATCC 204508 / S288c) GN=ISD11 PE=1 SV=1	108.0	[0..2]	[84..5]
gi\|220952160 - gi\|220952160\|gb\|ACL88623.1\| bcn92-PA [synthetic construct] bcn92-PA - The gene bcn92 is referred to in FlyBase by the symbol Dmel\bcn92 (CG3717, FBgn0013432). It is a pro...	108.0	[0..4]	[87..2]
gi\|71000545, gi\|... - gi\|71000545\|ref\|XP_754956.1\| Complex 1 protein (LYR family) family [Aspergillus fumigatus Af293], gi...	108.0	[0..3]	[87..8]

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Predicted Domain #1

Region A:
Residues: [1-91]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAASSRAQVL DLYRAMMRES KHFSAYNYRM YAVRRIRDAF RENKNVKDPV EIQALVNKAK  60
   61 RDLEIIRRQV HIGQLYSTDK LIIENQEKPR T

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	19.657577
Match:	PF05347.6
Description:	No description for PF05347.6 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

		MCM Score	GO Score	GO Term	SCOP Match	SCOP Description
View	Download	0.962	N/A	N/A	a.4.5	"Winged helix" DNA-binding domain

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits