YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|13277855, gi\|...
Organism:	Mus musculus
Length:	112 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|13277855, gi|....

Description	E-value	Query Range	Subject Range
CX6A1_MOUSE - Cytochrome c oxidase subunit 6A1, mitochondrial OS=Mus musculus GN=Cox6a1 PE=1 SV=2	194.0	[0..2]	[112..1]
CX6A1_RAT - Cytochrome c oxidase subunit 6A1, mitochondrial OS=Rattus norvegicus GN=Cox6a1 PE=1 SV=2	189.0	[0..2]	[112..1]
COX6A1 - cytochrome c oxidase subunit VIa polypeptide 1 gi\|123999658, gi... - gi\|123999658\|gb\|ABM87370.1\| cytochrome c oxidase subunit VIa polypeptide 1 [synthetic construct], gi... gi\|114647282 - gi\|114647282\|ref\|XP_001160455.1\| PREDICTED: similar to 15E1.4 (Cytochrome C Oxidase Polypeptide VIa-...	186.0	[0..5]	[112..2]
gi\|114607227, gi... - gi\|55626522\|ref\|XP_518442.1\| PREDICTED: similar to 15E1.4 (Cytochrome C Oxidase Polypeptide VIa-live...	180.0	[0..5]	[112..2]
CX6A1_RABIT - Cytochrome c oxidase subunit 6A1, mitochondrial OS=Oryctolagus cuniculus GN=COX6A1 PE=3 SV=1	178.0	[0..5]	[111..2]
gi\|109098951 - gi\|109098951\|ref\|XP_001088806.1\| PREDICTED: similar to cytochrome c oxidase subunit VIa polypeptide ...	173.0	[0..5]	[112..2]
gi\|76638499 - gi\|76638499\|ref\|XP_587918.2\| PREDICTED: similar to cytochrome c oxidase subunit VIa polypeptide 1 pr...	173.0	[0..5]	[112..18]

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Predicted Domain #1

Region A:
Residues: [1-112]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MMASAVLSAS RVSRPLGRAL PGLRRPMSSG AHGEEGSARM WKALTYFVAL PGVGVSMLNV  60
   61 FLKSRHEEHE RPPFVAYPHL RIRTKPFPWG DGNHTLFHNP HVNPLPTGYE DE

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	29.69897
Match:	1occG
Description:	Mitochondrial cytochrome c oxidase subunit VIa
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
cytochrome-c oxidase activity	0.43268723383487	bayes_pls_golite062009
oxidoreductase activity, acting on heme group of donors	0.43268723383487	bayes_pls_golite062009
oxidoreductase activity, acting on heme group of donors, oxygen as acceptor	0.43268723383487	bayes_pls_golite062009
heme-copper terminal oxidase activity	0.280428750542101	bayes_pls_golite062009
hydrogen ion transmembrane transporter activity	0.13082545919054	bayes_pls_golite062009
monovalent inorganic cation transmembrane transporter activity	0.04800265254548	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: