YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|147905969, gi...
Organism:	Mus musculus
Length:	279 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|147905969, gi....

Description	E-value	Query Range	Subject Range
gi\|27705394, gi\|... - ref\|XP_230940.1\| similar to Protein phosphatase 1, regulatory subunit 3D (Protein phosphatase 1, reg...	388.0	[0..1]	[279..1]
gi\|28704029 - gi\|28704029\|gb\|AAH47502.1\| Protein phosphatase 1, regulatory (inhibitor) subunit 3D [Homo sapiens]	371.0	[0..1]	[279..1]
gi\|109091410 - gi\|109091410\|ref\|XP_001090753.1\| PREDICTED: protein phosphatase 1, regulatory subunit 3D [Macaca mul...	367.0	[0..1]	[279..1]
gi\|114682874 - gi\|114682874\|ref\|XP_001142110.1\| PREDICTED: protein phosphatase 1, regulatory subunit 3D [Pan troglo...	367.0	[0..1]	[279..1]
gi\|57104756 - gi\|57104756\|ref\|XP_543078.1\| PREDICTED: similar to Protein phosphatase 1, regulatory subunit 3D (Pro...	351.0	[0..1]	[279..1]

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Predicted Domain #1

Region A:
Residues: [1-130]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSKGSGSAPL PSTPGSRKLV PRSLSCLSDM DRRPCRPPGC DPRLRPIIQR RSRSLPTSPE  60
   61 RRAKAAGAPG AACGAGCNRQ VRVRFADALG LELAQVKVFN AGDDPSVPLH VLSRLAINSD 120
  121 LCCSSQDLEF

[Run NCBI BLAST on this sequence.]

Detection Method:

MSA

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

Predicted Domain #2

Region A:
Residues: [131-279]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 TLQCLVPDFS PPIETPGFGE RLARQLVCLE RVTCSDLGIS GTVRVRNVAF EKQVTVRYTF  60
   61 SGWRSAHEAV ARWRGPAGAE GTEDIFAFGF PVPPFLLELG SQVHFALRYG VAGAEYWDNN 120
  121 DGRDYSLTCR SHALHMPRGE CEESWIHFI

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	49.30103
Match:	2eefA
Description:	No description for 2eefA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits