Protein: | gi|31980617, gi|... |
Organism: | Mus musculus |
Length: | 232 amino acids |
Reference: | Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16 |
Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|31980617, gi|....
Description | E-value | Query Range |
Subject Range |
|
199.0 | [0..8] | [232..176] |
|
173.0 | [0..1] | [232..1] |
|
166.0 | [0..1] | [232..1] |
|
160.0 | [0..1] | [232..1] |
|
158.0 | [0..1] | [230..1] |
|
156.0 | [0..1] | [232..1] |
|
156.0 | [0..1] | [232..1] |
Region A: Residues: [1-116] |
1 11 21 31 41 51 | | | | | | 1 MAASAASSEH FEKLHEIFRG LLEDLQGVPE RLLGTAGTEE KKKLVRDFDE KQQEANETLA 60 61 EMEEELRYAP LTFRNPMMSK LRNYRKDLAK LHREVRSTPL TAAPGGRGDL KYGTYT |
Detection Method: | ![]() |
Confidence: | 3.56 |
Match: | 1vcsA |
Description: | Solution Structure of RSGI RUH-009, an N-Terminal Domain of Vti1a [Mus musculus] |
Matching Structure (courtesy of the PDB):![]() |
Term | Confidence | Notes |
phosphatidic acid binding | 4.43639331290696 | bayes_pls_golite062009 |
SNAP receptor activity | 2.87584659156593 | bayes_pls_golite062009 |
calcium channel inhibitor activity | 2.6070306401994 | bayes_pls_golite062009 |
binding | 2.10865031355861 | bayes_pls_golite062009 |
arachidonic acid binding | 2.07456472080416 | bayes_pls_golite062009 |
protein binding | 1.71065434412329 | bayes_pls_golite062009 |
transporter activity | 1.70608335538771 | bayes_pls_golite062009 |
substrate-specific transporter activity | 1.43050612049396 | bayes_pls_golite062009 |
myosin head/neck binding | 1.33894171285049 | bayes_pls_golite062009 |
transmembrane transporter activity | 1.13402377922348 | bayes_pls_golite062009 |
protein transporter activity | 0.874305466215024 | bayes_pls_golite062009 |
substrate-specific transmembrane transporter activity | 0.641704633739097 | bayes_pls_golite062009 |
SNARE binding | 0.387098576112631 | bayes_pls_golite062009 |
ion transmembrane transporter activity | 0.36574534937133 | bayes_pls_golite062009 |
Region A: Residues: [117-232] |
1 11 21 31 41 51 | | | | | | 1 LENEHLNRLQ SQRALLLQGT ESLNRATQSI ERSHRIATET DQIGTEIIEE LGEQRDQLER 60 61 TKSRLVNTNE NLSKSRKILR SMSRKVITNK LLLSVIILLE LAILVGLVYY KFFRHH |
Detection Method: | ![]() |
Confidence: | 5.0 |
Match: | 1gl2C |
Description: | Vesicle ransport v-SNARE protein VTI1b |
Matching Structure (courtesy of the PDB):![]() |