YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|118479767, gi...
Organism:	Bacillus thuringiensis str. Al Hakam
Length:	377 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|118479767, gi....

Description	E-value	Query Range	Subject Range
gi\|152025747, gi... - gi\|89201590\|ref\|ZP_01180328.1\| Alanine dehydrogenase and pyridine nucleotide transhydrogenase [Bacil...	5.0E-88	[1..377]	[1..377]
DHA_STAHJ - Alanine dehydrogenase OS=Staphylococcus haemolyticus (strain JCSC1435) GN=ald PE=3 SV=1	2.0E-87	[1..372]	[1..372]
gi\|75759987, gi\|... - gi\|75759987\|ref\|ZP_00740055.1\| Alanine dehydrogenase [Bacillus thuringiensis serovar israelensis ATC...	4.0E-87	[1..377]	[1..377]
gi\|30022698, gi\|... - gi\|30022698\|ref\|NP_834329.1\| alanine dehydrogenase [Bacillus cereus ATCC 14579], gi\|29898257\|gb\|AAP1... gi\|229129906, gi... - gi\|229129906\|ref\|ZP_04258872.1\| Alanine dehydrogenase [Bacillus cereus BDRD-Cer4], gi\|228653597\|gb\|E...	5.0E-87	[1..377]	[1..377]
DHA2_STAAW - Alanine dehydrogenase 2 OS=Staphylococcus aureus (strain MW2) GN=ald2 PE=3 SV=1 DHA2_STAAS - Alanine dehydrogenase 2 OS=Staphylococcus aureus (strain MSSA476) GN=ald2 PE=3 SV=1 DHA2_STAAC - Alanine dehydrogenase 2 OS=Staphylococcus aureus (strain COL) GN=ald2 PE=3 SV=1 gi\|90583532, gi\|... - gi\|90583532\|ref\|ZP_01239287.1\| Alanine dehydrogenase and pyridine nucleotide transhydrogenase [Staph... gi\|90585467, gi\|... - gi\|90585467\|ref\|ZP_01241176.1\| Alanine dehydrogenase and pyridine nucleotide transhydrogenase [Staph... gi\|151221815, gi... - gi\|151221815\|ref\|YP_001332637.1\| alanine dehydrogenase [Staphylococcus aureus subsp. aureus str. New... gi\|87161391\|ref\|... - alanine dehydrogenase [Staphylococcus aureus subsp. aureus USA300], alanine dehydrogenase [Staphyloc... gi\|253315116 - gi\|253315116\|ref\|ZP_04838329.1\| alanine dehydrogenase [Staphylococcus aureus subsp. aureus str. CF-M... gi\|160368732, gi... - gi\|161509923\|ref\|YP_001575582.1\| alanine dehydrogenase [Staphylococcus aureus subsp. aureus USA300_T... DHA2_STAA8 - Alanine dehydrogenase 2 OS=Staphylococcus aureus (strain NCTC 8325) GN=ald2 PE=3 SV=1 gi\|269203347\|ref... - alanine dehydrogenase [Staphylococcus aureus subsp. aureus ED98] DHA2_STAA3 - Alanine dehydrogenase 2 OS=Staphylococcus aureus (strain USA300) GN=ald2 PE=3 SV=1	1.0E-86	[1..372]	[1..372]
DHA2_STAAN - Alanine dehydrogenase 2 OS=Staphylococcus aureus (strain N315) GN=ald2 PE=1 SV=1 gi\|25284722 - pir\|\|A89955 alanine dehydrogenase [imported] - Staphylococcus aureus (strain N315)	1.0E-86	[1..372]	[1..372]
gi\|228614113, gi... - gi\|229169350\|ref\|ZP_04297060.1\| Alanine dehydrogenase [Bacillus cereus AH621], gi\|228614113\|gb\|EEK71... gi\|229135460, gi... - gi\|229135460\|ref\|ZP_04264247.1\| Alanine dehydrogenase [Bacillus cereus BDRD-ST196], gi\|228648021\|gb\|... gi\|163864552, gi... - gi\|89204121\|ref\|ZP_01182699.1\| Alanine dehydrogenase and pyridine nucleotide transhydrogenase [Bacil...	1.0E-86	[1..377]	[1..377]
DHA2_STAAM - Alanine dehydrogenase 2 OS=Staphylococcus aureus (strain Mu50 / ATCC 700699) GN=ald2 PE=3 SV=1 gi\|156722161, gi... - gi\|156980026\|ref\|YP_001442285.1\| alanine dehydrogenase [Staphylococcus aureus subsp. aureus Mu3], gi... gi\|255006494 - gi\|255006494\|ref\|ZP_05145095.2\| alanine dehydrogenase [Staphylococcus aureus subsp. aureus Mu50-omeg...	2.0E-86	[1..372]	[1..372]
DHA2_STAAR - Alanine dehydrogenase 2 OS=Staphylococcus aureus (strain MRSA252) GN=ald2 PE=3 SV=1	3.0E-86	[1..372]	[1..372]
DHA2_STAAB - Alanine dehydrogenase 2 OS=Staphylococcus aureus (strain bovine RF122 / ET3-1) GN=ald2 PE=3 SV=1	4.0E-86	[1..372]	[1..372]

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Predicted Domain #1

Region A:
Residues: [1-377]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MRIGIPTEIK NNENRVAMTP AGAVHLVQNG HEVFVQKGAG LGSGFTDEEY VQAGAKLVET  60
   61 AEEAWNQDMV MKVKEPVASE YGYFREGLIL FTYLHLAPEP ELTKALIDNK VVSIAYETVQ 120
  121 LDNRSLPLLA PMSEVAGRMS AQIGAQFLEK NKGGKGILLA GVPGVKRGKV TIIGGGQAGT 180
  181 NAAKIAVGLG ADVTIIDLSA ERLRQLDDIF GNQVKTLMSN PYNIAEAVKE SDLVIGAVLI 240
  241 PGAKAPKLVT EEMIQSMEPG SVVVDIAIDQ GGIFETTDRI TTHDNPTYEK HGVVHYAVAN 300
  301 MPGAVPRTST LALTNVTVPY AVQIANKGYK DACLGNTALL KGINTLDGYV TFEAVAEAHG 360
  361 LQYADAKELL EKAPALS

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	80.69897
Match:	2eezA
Description:	No description for 2eezA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits