YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|124499935, gi...
Organism:	Escherichia coli B
Length:	240 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|124499935, gi....

Description	E-value	Query Range	Subject Range
LPXH_VIBPA - UDP-2,3-diacylglucosamine hydrolase OS=Vibrio parahaemolyticus serotype O3:K6 (strain RIMD 2210633) ... LPXH_VIBPA - UDP-2,3-diacylglucosamine hydrolase OS=Vibrio parahaemolyticus GN=lpxH PE=3 SV=1	195.0	[0..1]	[240..1]
gi\|89075762, gi\|... - gi\|89075762\|ref\|ZP_01162150.1\| UDP-2,3-diacylglucosamine hydrolase [Photobacterium sp. SKA34], gi\|89...	195.0	[0..1]	[240..1]
LPXH_VIBVY - UDP-2,3-diacylglucosamine hydrolase OS=Vibrio vulnificus (strain YJ016) GN=lpxH PE=3 SV=1	194.0	[0..1]	[240..1]
LPXH_VIBVU - UDP-2,3-diacylglucosamine hydrolase OS=Vibrio vulnificus GN=lpxH PE=3 SV=2 LPXH_VIBVU - UDP-2,3-diacylglucosamine hydrolase OS=Vibrio vulnificus (strain CMCP6) GN=lpxH PE=3 SV=2	194.0	[0..1]	[240..1]
gi\|90580097, gi\|... - gi\|90580097\|ref\|ZP_01235905.1\| UDP-2,3-diacylglucosamine hydrolase [Vibrio angustum S14], gi\|9043898...	194.0	[0..1]	[240..1]
gi\|194538739, gi... - gi\|75853448\|ref\|ZP_00761304.1\| COG2908: Uncharacterized protein conserved in bacteria [Vibrio sp. Ex...	193.0	[0..1]	[240..1]
gi\|91226021, gi\|... - gi\|91226021\|ref\|ZP_01260948.1\| UDP-2,3-diacylglucosamine hydrolase [Vibrio alginolyticus 12G01], gi\|...	193.0	[0..1]	[240..1]
LPXH_SHISS - UDP-2,3-diacylglucosamine hydrolase OS=Shigella sonnei (strain Ss046) GN=lpxH PE=3 SV=1	189.0	[0..1]	[240..1]
gi\|15829840, gi\|... - gi\|15829840\|ref\|NP_308613.1\| UDP-2,3-diacylglucosamine hydrolase [Escherichia coli O157:H7 str. Saka... gi\|217322624, gi... - gi\|217326403\|ref\|ZP_03442487.1\| UDP-2,3-diacylglucosamine hydrolase [Escherichia coli O157:H7 str. T... gi\|195936091 - gi\|195936091\|ref\|ZP_03081473.1\| UDP-2,3-diacylglucosamine hydrolase [Escherichia coli O157:H7 str. E... gi\|168798098, gi... - gi\|189379238\|gb\|EDU97654.1\| UDP-2,3-diacylglucosamine hydrolase [Escherichia coli O157:H7 str. EC508... gi\|189373627, gi... - gi\|189373627\|gb\|EDU92043.1\| UDP-2,3-diacylglucosamine hydrolase [Escherichia coli O157:H7 str. EC869... gi\|189002801, gi... - gi\|189002801\|gb\|EDU71787.1\| UDP-2,3-diacylglucosamine hydrolase [Escherichia coli O157:H7 str. EC407... LPXH_ECO5E - UDP-2,3-diacylglucosamine hydrolase OS=Escherichia coli O157:H7 (strain EC4115 / EHEC) GN=lpxH PE=3 ... gi\|208737014, gi... - gi\|208822821\|ref\|ZP_03263139.1\| UDP-2,3-diacylglucosamine hydrolase [Escherichia coli O157:H7 str. E... gi\|208732462, gi... - gi\|208815814\|ref\|ZP_03256993.1\| UDP-2,3-diacylglucosamine hydrolase [Escherichia coli O157:H7 str. E... gi\|208729254, gi... - gi\|208809453\|ref\|ZP_03251790.1\| UDP-2,3-diacylglucosamine hydrolase [Escherichia coli O157:H7 str. E... gi\|188017692, gi... - gi\|188017692\|gb\|EDU55814.1\| UDP-2,3-diacylglucosamine hydrolase [Escherichia coli O157:H7 str. EC411... gi\|254591112, gi... - gi\|254791712\|ref\|YP_003076549.1\| UDP-2,3-diacylglucosamine pyrophosphatase [Escherichia coli O157:H7... gi\|209777906, gi... - pir\|\|E85552 hypothetical protein ybbF [imported] - Escherichia coli (strain O157:H7, substrain EDL9... gi\|168774600, gi... - gi\|187769794\|gb\|EDU33638.1\| UDP-2,3-diacylglucosamine hydrolase [Escherichia coli O157:H7 str. EC419... gi\|12513421, gi\|... - gi\|15800261\|ref\|NP_286273.1\| UDP-2,3-diacylglucosamine hydrolase [Escherichia coli O157:H7 EDL933], ... gi\|189362459, gi... - gi\|189362459\|gb\|EDU80878.1\| UDP-2,3-diacylglucosamine hydrolase [Escherichia coli O157:H7 str. EC448... gi\|168760312, gi... - gi\|189369052\|gb\|EDU87468.1\| UDP-2,3-diacylglucosamine hydrolase [Escherichia coli O157:H7 str. EC450... gi\|168754638, gi... - gi\|189358039\|gb\|EDU76458.1\| UDP-2,3-diacylglucosamine hydrolase [Escherichia coli O157:H7 str. EC440... LPXH_ECO57 - UDP-2,3-diacylglucosamine hydrolase OS=Escherichia coli O157:H7 GN=lpxH PE=3 SV=1	188.0	[0..1]	[240..1]
gi\|24111892, gi\|... - gi\|24111892\|ref\|NP_706402.1\| UDP-2,3-diacylglucosamine hydrolase [Shigella flexneri 2a str. 301], gi... gi\|75228702, gi\|... - gi\|75228702\|ref\|ZP_00715319.1\| COG2908: Uncharacterized protein conserved in bacteria [Escherichia c... LPXH_SHIF8 - UDP-2,3-diacylglucosamine hydrolase OS=Shigella flexneri serotype 5b (strain 8401) GN=lpxH PE=3 SV=1 LPXH_ECO24 - UDP-2,3-diacylglucosamine hydrolase OS=Escherichia coli O139:H28 (strain E24377A / ETEC) GN=lpxH PE=... LPXH_SHIB3 - UDP-2,3-diacylglucosamine hydrolase OS=Shigella boydii serotype 18 (strain CDC 3083-94 / BS512) GN=l... gi\|30040252, gi\|... - gi\|30062008\|ref\|NP_836179.1\| UDP-2,3-diacylglucosamine hydrolase [Shigella flexneri 2a str. 2457T], ... gi\|194437461, gi... - gi\|83587025\|ref\|ZP_00925655.1\| COG2908: Uncharacterized protein conserved in bacteria [Escherichia c... LPXH_SHIBS - UDP-2,3-diacylglucosamine hydrolase OS=Shigella boydii serotype 4 (strain Sb227) GN=lpxH PE=3 SV=1 gi\|193067525, gi... - gi\|75238985\|ref\|ZP_00722967.1\| COG2908: Uncharacterized protein conserved in bacteria [Escherichia c... LPXH_SHIFL - UDP-2,3-diacylglucosamine hydrolase OS=Shigella flexneri GN=lpxH PE=3 SV=1 LPXH_ECO55 - UDP-2,3-diacylglucosamine hydrolase OS=Escherichia coli (strain 55989 / EAEC) GN=lpxH PE=3 SV=1 LPXH_ECO8A - UDP-2,3-diacylglucosamine hydrolase OS=Escherichia coli O8 (strain IAI1) GN=lpxH PE=3 SV=1	188.0	[0..1]	[240..1]

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Predicted Domain #1

Region A:
Residues: [1-240]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MATLFIADLH LCVEEPAITA GFLRFLAGEA RKADALYILG DLFEAWIGDD DPNPLHRKMA  60
   61 AAIKAVSDSG VPCYFIHGNR DFLLGKRFAR ESGMTLLPEE KVLELYGRRV LIMHGDTLCT 120
  121 DDAGYQAFRA KVHKPWLQTL FLALPLFVRK RIAARMRANS KEANSSKSLA IMDVNQNAVV 180
  181 SAMEKHQVQW LIHGHTHRPA VHELIANQQP AFRVVLGAWH TEGSMVKVTA DDVELIHFPF 240
  241

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	19.69897
Match:	2q8uA
Description:	No description for 2q8uA was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits