YRC Public Data Repository - Protein Structure Prediction

Protein:	CNCG_RAT
Organism:	Rattus norvegicus
Length:	83 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for CNCG_RAT.

Description	E-value	Query Range	Subject Range
CCDS8672.1_1 - null gi\|109095798 - gi\|109095798\|ref\|XP_001091111.1\| PREDICTED: phosphodiesterase 6H, cGMP-specific, cone, gamma [Macaca...	163.0	[0..1]	[83..1]
gi\|114643795 - gi\|114643795\|ref\|XP_001158553.1\| PREDICTED: phosphodiesterase 6H, cGMP-specific, cone, gamma [Pan tr...	162.0	[0..1]	[83..1]
gi\|28628607 - gi\|28628607\|gb\|AAO49274.1\|AF480878_1 cone phosphodiesterase beta subunit [Tamias striatus]	162.0	[0..1]	[83..1]
gi\|73997599 - gi\|73997599\|ref\|XP_853743.1\| PREDICTED: similar to Retinal cone rhodopsin-sensitive cGMP 3,5-cyclic ...	161.0	[0..1]	[83..1]
CNCG_BOVIN - Retinal cone rhodopsin-sensitive cGMP 3',5'-cyclic phosphodiesterase subunit gamma OS=Bos taurus GN=...	160.0	[0..1]	[83..1]
gi\|68357320 - gi\|68357320\|ref\|XP_692194.1\| PREDICTED: similar to Phosphodiesterase 6G, cGMP-specific, rod, gamma [...	160.0	[0..13]	[83..278]
PDE6H - phosphodiesterase 6H, cGMP-specific, cone, gamma	158.0	[0..1]	[83..1]
gi\|49256290, gi\|... - gi\|49256290\|gb\|AAH74358.1\| Pde6ha protein [Xenopus laevis], gi\|148227475\|ref\|NP_001086232.1\| phospho...	153.0	[0..4]	[83..8]
gi\|134026194, gi... - gi\|62857831\|ref\|NP_001016745.1\| phosphodiesterase 6H [Xenopus (Silurana) tropicalis], gi\|134026194\|g...	152.0	[0..4]	[83..8]

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Predicted Domain #1

Region A:
Residues: [1-83]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MSDSPCLSPP APSQGPTTPR KGPPKFKQRQ TRQFKSKPPK KGVKGFGDDI PGMEGLGTDI  60
   61 TVICPWEAFS HLELHELAQF GII

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	31.0
Match:	2ju4A
Description:	No description for 2ju4A was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits