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View Structure Prediction Details

Protein: gi|124000283, gi...
Organism: synthetic construct
Length: 97 amino acids
Reference: Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16



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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|124000283, gi....

Description E-value Query
Range
Subject
Range
NPY_XENLA - Pro-neuropeptide Y OS=Xenopus laevis GN=npy PE=3 SV=1
1.0E-38 [1..97] [1..97]
NPY_CHICK - Pro-neuropeptide Y OS=Gallus gallus GN=NPY PE=3 SV=1
2.0E-38 [1..97] [1..97]
gi|112419089, gi... - gi|134024445|gb|AAI35388.1| Neuropeptide Y [Xenopus tropicalis], gi|118405076|ref|NP_001072530.1| ne...
2.0E-38 [1..97] [1..97]
PYYA_DANRE - Peptide YY-A OS=Danio rerio GN=pyya PE=2 SV=1
2.0E-38 [1..97] [1..97]
NPY_TYPNA - Pro-neuropeptide Y OS=Typhlonectes natans GN=npy PE=1 SV=1
3.0E-38 [1..97] [1..97]
NPY_MOUSE - Pro-neuropeptide Y OS=Mus musculus GN=Npy PE=1 SV=2
4.0E-38 [1..97] [1..97]
NPY_RAT - Pro-neuropeptide Y OS=Rattus norvegicus GN=Npy PE=1 SV=1
8.0E-38 [1..97] [2..98]
NPY_MACMU - Pro-neuropeptide Y OS=Macaca mulatta GN=NPY PE=1 SV=1
CCDS5387.1_1 - null
2.0E-37 [1..97] [1..97]

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Predicted Domain #1
Region A:
Residues: [1-97]
      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLGNKRLGLS GLTLALSLLV CLGALAEAYP SKPDNPGEDA PAEDMARYYS ALRHYINLIT  60
   61 RQRYGKRSSP ETLISDLLMR ESTENVPRTR LEDPAMW

[Run NCBI BLAST on this sequence.]

Detection Method: deduced

Shown below are all of our de novo (Rosetta) predictions for this domain.
Click here to view only most confident match.

    MCM
Score
SCOP
Match
SCOP Description
View Download 0.436 a.4.5 "Winged helix" DNA-binding domain
View Download 0.430 a.4.13 Sigma3 and sigma4 domains of RNA polymerase sigma factors
View Download 0.415 a.4.5 "Winged helix" DNA-binding domain
View Download 0.415 a.159.1 Protein serine/threonine phosphatase 2C, C-terminal domain
View Download 0.388 a.159.1 Protein serine/threonine phosphatase 2C, C-terminal domain


YRC Informatics Platform - Version 3.0
Created and Maintained by: Michael Riffle