YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|121613608, gi...
Organism:	Campylobacter jejuni subsp. jejuni 81-176
Length:	121 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|121613608, gi....

Description	E-value	Query Range	Subject Range
gi\|88190627, gi\|... - gi\|88596938\|ref\|ZP_01100174.1\| flagellar protein FlaG [Campylobacter jejuni subsp. jejuni 84-25], gi...	109.0	[0..1]	[121..1]
gi\|85841228, gi\|... - gi\|86151599\|ref\|ZP_01069813.1\| flagellar protein FlaG [Campylobacter jejuni subsp. jejuni 260.94], g...	109.0	[0..1]	[121..1]
gi\|89100626, gi\|... - gi\|89100626\|ref\|ZP_01173484.1\| flagellar protein FlaG [Bacillus sp. NRRL B-14911], gi\|89084650\|gb\|EA...	108.0	[0..3]	[120..2]
gi\|49078072 - gi\|49078072\|gb\|AAT49748.1\| PA1093 [synthetic construct]	104.0	[0..1]	[121..1]
gi\|22778188, gi\|... - gi\|23099957\|ref\|NP_693423.1\| flagellar protein FlaG [Oceanobacillus iheyensis HTE831], gi\|22778188\|d...	103.0	[0..1]	[120..1]
gi\|9947010, gi\|1... - gi\|9947010\|gb\|AAG04482.1\|AE004540_2 hypothetical protein PA1093 [Pseudomonas aeruginosa PAO1], gi\|15... gi\|11349092 - pir\|\|F83507 hypothetical protein PA1093 [imported] - Pseudomonas aeruginosa (strain PAO1)	103.0	[0..1]	[121..1]
gi\|53727488, gi\|... - gi\|53727488\|ref\|ZP_00138681.2\| COG1334: Uncharacterized flagellar protein FlaG [Pseudomonas aerugino... gi\|218773171, gi... - gi\|218892943\|ref\|YP_002441812.1\| hypothetical protein PLES_42281 [Pseudomonas aeruginosa LESB58], gi... gi\|194545214, gi... - gi\|254234229\|ref\|ZP_04927552.1\| hypothetical protein PACG_00064 [Pseudomonas aeruginosa C3719], gi\|1...	102.0	[0..1]	[121..1]
gi\|152938528, gi... - gi\|153951082\|ref\|YP_001398425.1\| flagellar protein FlaG [Campylobacter jejuni subsp. doylei 269.97],...	100.0	[0..1]	[121..1]
gi\|114319863, gi... - gi\|78701921\|ref\|ZP_00866367.1\| flagellin FlaG, putative [Alkalilimnicola ehrlichei MLHE-1], gi\|78520...	100.0	[0..8]	[121..25]
gi\|86149077, gi\|... - gi\|86149077\|ref\|ZP_01067309.1\| flagellar protein FlaG [Campylobacter jejuni subsp. jejuni CF93-6], g... gi\|87304597, gi\|... - gi\|87304597\|ref\|ZP_01086753.1\| flagellar protein FlaG [Campylobacter jejuni subsp. jejuni 81-176], g...	99.0	[0..10]	[121..1]

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Predicted Domain #1

Region A:
Residues: [1-121]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MEISKANGQM DTALANISQR TSETQASLNI QTDRSQGQEG DDGQQRGVSE KLADITKKLN  60
   61 EQMDSLDTNV RFGYSDKIGS MYISVTEKST GREIRQIPSE EAMRLAEYFR DVIGMIFDKE 120
  121 S

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	18.39794
Match:	2hc5A
Description:	No description for 2hc5A was found.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits