YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|133731995, gi...
Organism:	Listeria monocytogenes F6900
Length:	187 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|133731995, gi....

Description	E-value	Query Range	Subject Range
gi\|89084655, gi\|... - gi\|89100631\|ref\|ZP_01173489.1\| ribosomal subunit interface protein [Bacillus sp. NRRL B-14911], gi\|8...	226.0	[0..2]	[185..1]
gi\|254044704, gi... - gi\|254555777\|ref\|YP_003062194.1\| ribosomal protein S30EA [Lactobacillus plantarum JDM1], gi\|25404470... gi\|28270431, gi\|... - gi\|28377598\|ref\|NP_784490.1\| ribosomal protein S30EA [Lactobacillus plantarum WCFS1], gi\|28270431\|em... gi\|227896504, gi... - gi\|227896504\|ref\|ZP_04014309.1\| ribosome-associated inhibitor protein Y [Lactobacillus plantarum sub...	223.0	[0..1]	[187..1]
gi\|91804599, gi\|... - gi\|92088596\|ref\|ZP_01273557.1\| Sigma 54 modulation protein/ribosomal protein S30EA [Lactobacillus re...	222.0	[0..1]	[185..1]
gi\|238856791, gi... - gi\|238856791\|ref\|ZP_04647051.1\| ribosomal subunit interface protein [Enterococcus faecalis TUSoD Ef1... gi\|29343775, gi\|... - gi\|29376312\|ref\|NP_815466.1\| ribosomal subunit interface protein [Enterococcus faecalis V583], gi\|29...	221.0	[0..1]	[187..1]
gi\|227530706, gi... - gi\|227530706\|ref\|ZP_03960755.1\| ribosome-associated inhibitor protein Y [Lactobacillus reuteri MM4-1... gi\|227071538, gi... - gi\|227363438\|ref\|ZP_03847562.1\| ribosome-associated inhibitor protein Y [Lactobacillus reuteri MM2-3... gi\|227955926, gi... - gi\|227976164\|ref\|ZP_04024424.1\| ribosome-associated inhibitor protein Y [Lactobacillus reuteri SD211... gi\|227545123, gi... - gi\|227545123\|ref\|ZP_03975172.1\| ribosome-associated inhibitor protein Y [Lactobacillus reuteri CF48-... gi\|89079187, gi\|... - gi\|89090991\|ref\|ZP_01164021.1\| Sigma 54 modulation protein/ribosomal protein S30EA [Lactobacillus re...	221.0	[0..1]	[185..1]
gi\|56421644, gi\|... - gi\|56421644\|ref\|YP_148962.1\| ribosomal protein S30EA [Geobacillus kaustophilus HTA426], gi\|56381486\|...	220.0	[0..2]	[187..1]
gi\|228771268, gi... - gi\|228988412\|ref\|ZP_04148503.1\| Ribosome-associated factor Y [Bacillus thuringiensis serovar tochigi... gi\|217962670, gi... - gi\|217962670\|ref\|YP_002341244.1\| ribosomal subunit interface protein [Bacillus cereus AH187], gi\|217... gi\|229158753, gi... - gi\|229158753\|ref\|ZP_04286811.1\| Ribosome-associated factor Y [Bacillus cereus ATCC 4342], gi\|2286247... gi\|222098642, gi... - gi\|222098642\|ref\|YP_002532700.1\| ribosomal subunit interface protein [Bacillus cereus Q1], gi\|221242... gi\|228641531, gi... - gi\|229141916\|ref\|ZP_04270442.1\| Ribosome-associated factor Y [Bacillus cereus BDRD-ST26], gi\|2286415... gi\|47569295, gi\|... - gi\|47569295\|ref\|ZP_00239980.1\| ribosomal subunit interface protein [Bacillus cereus G9241], gi\|47568...	218.0	[0..2]	[186..1]
gi\|86555609, gi\|... - gi\|86607067\|ref\|YP_475830.1\| ribosomal subunit interface protein [Synechococcus sp. JA-3-3Ab], gi\|86... gi\|86607067 - gi\|86607067\|ref\|YP_475830.1\| ribosomal subunit interface protein [Cyanobacteria bacterium Yellowston...	218.0	[0..1]	[185..1]
gi\|186683153, gi... - gi\|23125050\|ref\|ZP_00107001.1\| COG1544: Ribosome-associated protein Y (PSrp-1) [Nostoc punctiforme P...	218.0	[0..2]	[185..1]
Y2139_STAHJ - Uncharacterized protein SH2139 OS=Staphylococcus haemolyticus (strain JCSC1435) GN=SH2139 PE=3 SV=1	218.0	[0..1]	[186..1]

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Predicted Domain #1

Region A:
Residues: [1-187]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLKYNIRGEN IEVTEPIRDY VEKKIDKLER YFTETPDANV HVNLKVYSDK NAKVEVTIPL  60
   61 PNLVLRAEET SGDLYASIDL IVDKLERQIR KHKTKVNRKF RDKGAERDYF AYSDVNGSTP 120
  121 PEENEGDFDL EIVRTKQFSL KPMDSEEAVL QMNLLGHSFY VYTDAETNGT NIVYSRKDGK 180
  181 YGLIETN

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	26.69897
Match:	1n3gA
Description:	Ribosome binding protein Y (YfiA homologue)
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
binding	1.47304811799096	bayes_pls_golite062009
protein binding	0.411183424287687	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: