YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|126941397, gi...
Organism:	Listeria monocytogenes J0161
Length:	154 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|126941397, gi....

Description	E-value	Query Range	Subject Range
gi\|255521295 - gi\|255521295\|ref\|ZP_05388532.1\| hypothetical protein LmonocFSL_08735 [Listeria monocytogenes FSL J1-... gi\|254992102 - gi\|254992102\|ref\|ZP_05274292.1\| hypothetical protein LmonocytoFSL_02719 [Listeria monocytogenes FSL ... gi\|46881080, gi\|... - gi\|46907811\|ref\|YP_014200.1\| universal stress protein [Listeria monocytogenes str. 4b F2365], gi\|468... gi\|254873941, gi... - gi\|254873941\|ref\|ZP_05246651.1\| hypothetical protein LmonocytogFSL_14412 [Listeria monocytogenes FSL... gi\|47018170, gi\|... - gi\|47093442\|ref\|ZP_00231206.1\| universal stress protein family [Listeria monocytogenes str. 4b H7858... gi\|254931520, gi... - gi\|254931520\|ref\|ZP_05264879.1\| hypothetical protein LmonH_03792 [Listeria monocytogenes HPB2262], g... gi\|217964272, gi... - gi\|217964272\|ref\|YP_002349950.1\| universal stress protein family [Listeria monocytogenes HCC23], gi\|... gi\|254824361 - gi\|254824361\|ref\|ZP_05229362.1\| hypothetical protein LmonFS_04309 [Listeria monocytogenes FSL J1-194... gi\|224499763 - gi\|224499763\|ref\|ZP_03668112.1\| universal stress protein family [Listeria monocytogenes Finland 1988... gi\|225876643, gi... - gi\|226224181\|ref\|YP_002758288.1\| hypothetical protein Lm4b_01591 [Listeria monocytogenes Clip81459],... gi\|254880169 - gi\|254880169\|ref\|ZP_05252879.1\| hypothetical protein LmonFSL_13301 [Listeria monocytogenes FSL J2-07... gi\|254852203 - gi\|254852203\|ref\|ZP_05241551.1\| hypothetical protein LmonoFSL_02469 [Listeria monocytogenes FSL R2-5...	149.0	[0..1]	[154..1]
gi\|16800683 - gi\|16800683\|ref\|NP_470951.1\| hypothetical protein lin1615 [Listeria innocua Clip11262] gi\|16414102, gi\|... - pir\|\|AF1634 hypothetical protein homolog lin1615 [imported] - Listeria innocua (strain Clip11262), g...	146.0	[0..1]	[152..1]
gi\|228917268, gi... - gi\|228917268\|ref\|ZP_04080825.1\| Universal stress protein [Bacillus thuringiensis serovar pulsiensis ... gi\|228935935, gi... - gi\|228935935\|ref\|ZP_04098745.1\| Universal stress protein [Bacillus thuringiensis serovar andalousien... gi\|228929678, gi... - gi\|228929678\|ref\|ZP_04092696.1\| Universal stress protein [Bacillus thuringiensis serovar pondicherie... gi\|228771923, gi... - gi\|228987875\|ref\|ZP_04147984.1\| Universal stress protein [Bacillus thuringiensis serovar tochigiensi... gi\|228811341, gi... - gi\|228948354\|ref\|ZP_04110637.1\| Universal stress protein [Bacillus thuringiensis serovar monterrey B... gi\|229124195, gi... - gi\|229124195\|ref\|ZP_04253387.1\| Universal stress protein [Bacillus cereus 95/8201], gi\|228659497\|gb\|... gi\|229093721, gi... - gi\|229093721\|ref\|ZP_04224820.1\| Universal stress protein [Bacillus cereus Rock3-42], gi\|228689606\|gb... gi\|228625191, gi... - gi\|229158233\|ref\|ZP_04286300.1\| Universal stress protein [Bacillus cereus ATCC 4342], gi\|228625191\|g... gi\|229141353, gi... - gi\|229141353\|ref\|ZP_04269891.1\| Universal stress protein [Bacillus cereus BDRD-ST26], gi\|228642134\|g... gi\|229198783, gi... - gi\|229198783\|ref\|ZP_04325479.1\| Universal stress protein [Bacillus cereus m1293], gi\|228584716\|gb\|EE... gi\|229186885, gi... - gi\|229186885\|ref\|ZP_04314040.1\| Universal stress protein [Bacillus cereus BGSC 6E1], gi\|228596622\|gb... gi\|65321995 - gi\|65321995\|ref\|ZP_00394954.1\| COG0589: Universal stress protein UspA and related nucleotide-binding... gi\|118479769, gi... - gi\|118479769\|ref\|YP_896920.1\| universal stress protein [Bacillus thuringiensis str. Al Hakam], gi\|11...	143.0	[0..1]	[151..19]
Y1215_STAHJ - Putative universal stress protein SH1215 OS=Staphylococcus haemolyticus (strain JCSC1435) GN=SH1215 ...	143.0	[0..2]	[151..1]
gi\|156722162, gi... - gi\|156980027\|ref\|YP_001442286.1\| hypothetical protein SAHV_1696 [Staphylococcus aureus subsp. aureus... gi\|151221816, gi... - gi\|151221816\|ref\|YP_001332638.1\| universal stress protein family protein [Staphylococcus aureus subs... Y1759_STAAC - Putative universal stress protein SACOL1759 OS=Staphylococcus aureus (strain COL) GN=SACOL1759 PE=3 ... Y1819_STAA8 - Putative universal stress protein SAOUHSC_01819 OS=Staphylococcus aureus (strain NCTC 8325) GN=SAOUH... gi\|227245637, gi... - gi\|227557901\|ref\|ZP_03987948.1\| universal stress protein [Staphylococcus aureus subsp. aureus MN8], ... gi\|227899789, gi... - gi\|227899789\|ref\|ZP_04017594.1\| universal stress protein [Staphylococcus aureus subsp. aureus TCH60]... gi\|251814700, gi... - gi\|251814700\|ref\|ZP_04829173.1\| universal stress protein [Staphylococcus aureus subsp. aureus TCH70]... gi\|253315115 - gi\|253315115\|ref\|ZP_04838328.1\| universal stress protein [Staphylococcus aureus subsp. aureus str. C... gi\|253723882, gi... - gi\|253732360\|ref\|ZP_04866525.1\| universal stress protein [Staphylococcus aureus subsp. aureus USA300... gi\|253727560, gi... - gi\|253734506\|ref\|ZP_04868671.1\| universal stress protein [Staphylococcus aureus subsp. aureus TCH130... gi\|255006495 - gi\|255006495\|ref\|ZP_05145096.2\| universal stress protein [Staphylococcus aureus subsp. aureus Mu50-o... gi\|269203348\|ref... - universal stress protein [Staphylococcus aureus subsp. aureus ED98] Y1656_STAA3 - Putative universal stress protein SAUSA300_1656 OS=Staphylococcus aureus (strain USA300) GN=SAUSA300... Y1569_STAAB - Putative universal stress protein SAB1569 OS=Staphylococcus aureus (strain bovine RF122 / ET3-1) GN=... gi\|87128061\|gb\|A... - universal stress protein family [Staphylococcus aureus subsp. aureus USA300], universal stress prote... Y1532_STAAN - Putative universal stress protein SA1532 OS=Staphylococcus aureus (strain N315) GN=SA1532 PE=1 SV=1 gi\|90583531, gi\|... - gi\|90583531\|ref\|ZP_01239286.1\| UspA [Staphylococcus aureus subsp. aureus JH1], gi\|90427385\|gb\|EAS528... gi\|90430855, gi\|... - gi\|90585468\|ref\|ZP_01241177.1\| UspA [Staphylococcus aureus subsp. aureus JH9], gi\|90430855\|gb\|EAS562... gi\|221137941 - gi\|221137941\|ref\|ZP_03562743.1\| universal stress protein [Staphylococcus aureus subsp. aureus str. J... gi\|160368733, gi... - gi\|161509924\|ref\|YP_001575583.1\| universal stress protein [Staphylococcus aureus subsp. aureus USA30... gi\|221142345 - gi\|221142345\|ref\|ZP_03566838.1\| universal stress protein [Staphylococcus aureus subsp. aureus str. J... Y1637_STAAS - Putative universal stress protein SAS1637 OS=Staphylococcus aureus (strain MSSA476) GN=SAS1637 PE=3 ... Y1710_STAAM - Putative universal stress protein SAV1710 OS=Staphylococcus aureus (strain Mu50 / ATCC 700699) GN=SA... Y1653_STAAW - Putative universal stress protein MW1653 OS=Staphylococcus aureus (strain MW2) GN=MW1653 PE=3 SV=1 Y1788_STAAR - Putative universal stress protein SAR1788 OS=Staphylococcus aureus (strain MRSA252) GN=SAR1788 PE=3 ... gi\|25506249 - pir\|\|B89955 conserved hypothetical protein SA1532 [imported] - Staphylococcus aureus (strain N315)	143.0	[0..2]	[147..1]
Y1056_STAS1 - Putative universal stress protein SSP1056 OS=Staphylococcus saprophyticus subsp. saprophyticus (stra...	140.0	[0..2]	[147..1]
Y1273_STAEQ - Putative universal stress protein SERP1273 OS=Staphylococcus epidermidis (strain ATCC 35984 / RP62A)... Y1385_STAES - Putative universal stress protein SE_1385 OS=Staphylococcus epidermidis (strain ATCC 12228) GN=SE_13...	140.0	[0..2]	[151..1]
gi\|94546546, gi\|... - gi\|94993038\|ref\|YP_601137.1\| universal stress protein [Streptococcus pyogenes MGAS2096], gi\|94546546... gi\|94542653, gi\|... - gi\|94989145\|ref\|YP_597246.1\| universal stress protein [Streptococcus pyogenes MGAS9429], gi\|94542653... gi\|50903927, gi\|... - gi\|50914853\|ref\|YP_060825.1\| universal stress protein [Streptococcus pyogenes MGAS10394], gi\|5090392...	139.0	[0..1]	[148..31]
gi\|21905291, gi\|... - gi\|21911082\|ref\|NP_665350.1\| hypothetical protein SpyM3_1546 [Streptococcus pyogenes MGAS315], gi\|21... gi\|209541091, gi... - gi\|209559890\|ref\|YP_002286362.1\| hypothetical protein Spy49_1389 [Streptococcus pyogenes NZ131], gi\|... gi\|56807727 - gi\|56807727\|ref\|ZP_00365595.1\| COG0589: Universal stress protein UspA and related nucleotide-binding...	139.0	[0..1]	[148..1]
gi\|94994970, gi\|... - gi\|94994970\|ref\|YP_603068.1\| Universal stress protein family [Streptococcus pyogenes MGAS10750], gi\|...	139.0	[0..1]	[148..31]

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Predicted Domain #1

Region A:
Residues: [1-154]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MLQQYERVLV AVDGSKEAER AFQKAIQVAN RNDAALGLVH VIDTRAFSSV ANYDTSMADK  60
   61 ATEYADELLS GYKEDALKAG VTKVESYIEY GSPKTAITKE AAKAFQADLI MCGATGLNAV 120
  121 ERLLIGSVSE YIIRHSPCDV LVVRNEVPDY KDEK

[Run NCBI BLAST on this sequence.]

Detection Method:	PSI-BLAST
Confidence:	23.69897
Match:	1mjhA
Description:	"Hypothetical" protein MJ0577
Matching Structure (courtesy of the PDB):

Predicted functions:

Term	Confidence	Notes
catalytic activity	0.432879758487135	bayes_pls_golite062009

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits

Predicted functions: