YRC Public Data Repository - Protein Structure Prediction

Protein:	gi\|153213932, gi...
Organism:	Vibrio cholerae 1587
Length:	102 amino acids
Reference:	Drew K, et al. (2011) The proteome folding project: Proteome-scale prediction of structure and function. Genome Res. 2011 Sep 16

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Top Sequence Alignment Hits

Listed below are up to the top 10 sequence alignment matches, by species, for the PSI-BLAST search against the protein sequence for gi|153213932, gi....

Description	E-value	Query Range	Subject Range
gi\|24348650, gi\|... - gi\|24374147\|ref\|NP_718190.1\| hypothetical protein SO_2604 [Shewanella oneidensis MR-1], gi\|24348650\|... SO2604 - conserved hypothetical protein	121.0	[0..1]	[99..1]
gi\|78508988, gi\|... - gi\|78691601\|ref\|ZP_00856208.1\| conserved hypothetical protein [Shewanella sp. MR-7], gi\|78508988\|gb\|... gi\|82498119, gi\|... - gi\|82498119\|ref\|ZP_00883633.1\| conserved hypothetical protein [Shewanella sp. MR-4], gi\|82403868\|gb\|...	118.0	[0..1]	[99..1]
gi\|151365580, gi... - gi\|153000962\|ref\|YP_001366643.1\| YebG family protein [Shewanella baltica OS185], gi\|151365580\|gb\|ABS... gi\|160861197, gi... - gi\|160875675\|ref\|YP_001554991.1\| YebG family protein [Shewanella baltica OS195], gi\|160861197\|gb\|ABX...	116.0	[0..1]	[99..1]
gi\|82543672, gi\|... - gi\|82543672\|ref\|YP_407619.1\| DNA damage-inducible protein YebG [Shigella boydii Sb227], gi\|81245083\|...	116.0	[0..1]	[85..1]
gi\|217973078, gi... - gi\|217973078\|ref\|YP_002357829.1\| YebG family protein [Shewanella baltica OS223], gi\|217498213\|gb\|ACK... gi\|68520015, gi\|... - gi\|68542319\|ref\|ZP_00582052.1\| YebG [Shewanella baltica OS155], gi\|68520015\|gb\|EAN43531.1\| YebG [She...	114.0	[0..1]	[86..1]
gi\|214002654 - gi\|214002654\|ref\|ZP_03413389.1\| DNA damage-inducible protein YebG [Salmonella enterica subsp. enteri... gi\|29137103, gi\|... - gi\|29141476\|ref\|NP_804818.1\| DNA damage-inducible protein YebG [Salmonella enterica subsp. enterica ... gi\|213426802 - gi\|213426802\|ref\|ZP_03359552.1\| DNA damage-inducible protein YebG [Salmonella enterica subsp. enteri... gi\|16760833 - gi\|16760833\|ref\|NP_456450.1\| DNA damage-inducible protein YebG [Salmonella enterica subsp. enterica ... gi\|213161273 - gi\|213161273\|ref\|ZP_03346983.1\| DNA damage-inducible protein YebG [Salmonella enterica subsp. enteri... gi\|25367917, gi\|... - gi\|25367917\|pir\|\|AF0741 conserved hypothetical protein STY2088 [imported] - Salmonella enterica subs... gi\|213973829 - gi\|213973829\|ref\|ZP_03401088.1\| DNA damage-inducible protein YebG [Salmonella enterica subsp. enteri... gi\|213857228 - gi\|213857228\|ref\|ZP_03384199.1\| DNA damage-inducible protein YebG [Salmonella enterica subsp. enteri... gi\|213618637 - gi\|213618637\|ref\|ZP_03372463.1\| DNA damage-inducible protein YebG [Salmonella enterica subsp. enteri... gi\|213586019 - gi\|213586019\|ref\|ZP_03367845.1\| DNA damage-inducible protein YebG [Salmonella enterica subsp. enteri...	114.0	[0..1]	[94..1]
gi\|238912059 - gi\|238912059\|ref\|ZP_04655896.1\| DNA damage-inducible protein YebG [Salmonella enterica subsp. enteri... lcl\|NC_016856.1_... - [gene=yebG] [protein=DNA damage-inducible protein YebG] [protein_id=YP_005237841.1] [location=comple... gi\|207856597, gi... - gi\|207856597\|ref\|YP_002243248.1\| DNA damage-inducible protein YebG [Salmonella enterica subsp. enter... gi\|224583615, gi... - gi\|224583615\|ref\|YP_002637413.1\| hypothetical protein SPC_1834 [Salmonella enterica subsp. enterica ... gi\|198244625, gi... - gi\|198244625\|ref\|YP_002215205.1\| DNA damage-inducible protein [Salmonella enterica subsp. enterica s... gi\|205352412, gi... - gi\|205352412\|ref\|YP_002226213.1\| DNA damage-inducible protein YebG [Salmonella enterica subsp. enter... gi\|197250840, gi... - gi\|197250840\|ref\|YP_002146141.1\| yebG protein [Salmonella enterica subsp. enterica serovar Agona str... gi\|197241960, gi... - gi\|197263705\|ref\|ZP_03163779.1\| DNA damage-inducible protein [Salmonella enterica subsp. enterica se... gi\|62180457, gi\|... - gi\|62180457\|ref\|YP_216874.1\| DNA damage-inducible protein YebG [Salmonella enterica subsp. enterica ... gi\|194455654, gi... - gi\|194469290\|ref\|ZP_03075274.1\| DNA damage-inducible protein [Salmonella enterica subsp. enterica se... gi\|194736396, gi... - gi\|194736396\|ref\|YP_002114917.1\| DNA damage-inducible protein [Salmonella enterica subsp. enterica s... gi\|194444152, gi... - gi\|194444152\|ref\|YP_002041147.1\| DNA damage-inducible protein [Salmonella enterica subsp. enterica s... gi\|194406027, gi... - gi\|194447723\|ref\|YP_002045935.1\| DNA damage-inducible protein YebG [Salmonella enterica subsp. enter... gi\|195634280, gi... - gi\|195634280\|gb\|EDX52632.1\| DNA damage-inducible protein [Salmonella enterica subsp. enterica serova... gi\|205342737, gi... - gi\|205342737\|gb\|EDZ29501.1\| DNA damage-inducible protein [Salmonella enterica subsp. enterica serova... gi\|168241506, gi... - gi\|205339350\|gb\|EDZ26114.1\| DNA damage-inducible protein [Salmonella enterica subsp. enterica serova... gi\|168259849, gi... - gi\|205350747\|gb\|EDZ37378.1\| DNA damage-inducible protein [Salmonella enterica subsp. enterica serova... gi\|168233696, gi... - gi\|205332305\|gb\|EDZ19069.1\| DNA damage-inducible protein [Salmonella enterica subsp. enterica serova... gi\|168238508, gi... - gi\|197288661\|gb\|EDY28036.1\| DNA damage-inducible protein [Salmonella enterica subsp. enterica serova... gi\|16420417, gi\|... - gi\|16765224\|ref\|NP_460839.1\| DNA damage-inducible protein YebG [Salmonella typhimurium LT2], gi\|1642... gi\|167552488, gi... - gi\|205322920\|gb\|EDZ10759.1\| DNA damage-inducible protein [Salmonella enterica subsp. enterica serova... gi\|167993857, gi... - gi\|205328201\|gb\|EDZ14965.1\| DNA damage-inducible protein [Salmonella enterica subsp. enterica serova...	114.0	[0..1]	[94..1]
gi\|27361290, gi\|... - gi\|27365144\|ref\|NP_760672.1\| hypothetical protein VV1_1791 [Vibrio vulnificus CMCP6], gi\|27361290\|gb...	113.0	[0..1]	[102..1]
gi\|37680803, gi\|... - gi\|37680803\|ref\|NP_935412.1\| hypothetical protein VV2619 [Vibrio vulnificus YJ016], gi\|37199552\|dbj\|...	112.0	[0..1]	[86..1]
gi\|120598620, gi... - gi\|82743253\|ref\|ZP_00905910.1\| conserved hypothetical protein [Shewanella sp. W3-18-1], gi\|82719384\|... gi\|77815172, gi\|... - gi\|77815172\|ref\|ZP_00814413.1\| YebG [Shewanella putrefaciens CN-32], gi\|77809840\|gb\|EAO94230.1\| YebG...	111.0	[0..1]	[85..1]

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Predicted Domain #1

Region A:
Residues: [1-102]

      1          11         21         31         41         51         
      |          |          |          |          |          |          
    1 MAVIVKYVVE RNGEEKMTFT SKAEADAYDK MLDMADELFE LLGKSALIED EAKQEELAMF  60
   61 LAQNKEDVLC ALGAKRKPAP ATGKKPKAVA DSDDDESVDD AA

[Run NCBI BLAST on this sequence.]

Detection Method:	Pfam
Confidence:	44.346787
Match:	PF07130.3
Description:	No description for PF07130.3 was found.

Shown below is our most confident prediction for this domain.
Click here to view all matches.

Found no confident structure predictions for this domain.

TMHMM	2.0c	PSIPRED	v2.61
SignalP	3.0	COILS	1999
DISOPRED	v0.1	NCBI nr	06/2007
PSI-BLAST	2.2.18	FFAS	ffas03
PDB	06/2007	Pfam	22
HMMER	2.3.2

View Structure Prediction Details

Top Sequence Alignment Hits